PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277538.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CPP

Protein Properties

Length: 940aa MW: 101832 Da PI: 5.436

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277538.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.1	2.3e-15	530	568	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C++ C+C++C+N+ e XP_021277538.1 530 CKRCNCKKTKCLKLYCDCFAAGIYCADPCSCQGCFNRPE 568 89**********************************876 PP
2	TCR	48.6	1.6e-15	616	654	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs C+Ce+CkN XP_021277538.1 616 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 654 589***********************************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence
MDSPEPSKAP ISSSSAAASI SSSSPVQESP FSNYISSLSP IKHDKVPHVA QGFLGLNSPP 60 LVFTSPRINT LRRPQSSSAE VSQNGEGDKK NIDGPGRLER SVSELQQGLI TDIKKEDDTK 120 DSVSIQPSSS SGCVDEYLAD PVEADCANSE YSMNLNCKES NDAFQSSVNG LLETKNLKFT 180 DKNDVGREVD AAQLLSAQSE EGLERKLTSH VKPVKIEDEQ HAGQVKSDEC PEFESDVFDL 240 SSQEKECKNL DAQKVVEDYE DRCDGFLQLL PGSLQRVQAY EDFAENFEGV ADVTVDSMTN 300 DLEASEHQRG MSRRCLQFGE AQPEATANCS SSSLANGMIT SRSVATTSET EGLASSHVDL 360 SVISRQRQLV NLSHLAINMI PQHYGEKSSL TVSKPSGIGL HLNSIVNAIP MGRGGTSSMK 420 LAVDSMGIQG IKSASLMSCQ STENMESCSD AFEKVLAAPQ DGTLEAKACM IPGSAASESL 480 CTMESIECHT TLHRKMEISS EHGDGNEMFN QHSPKKKRKK SSNSTDGEGC KRCNCKKTKC 540 LKLYCDCFAA GIYCADPCSC QGCFNRPEYE DTVLETRQQI ESRNPLAFAP KIVQPVTEFP 600 VTSREDGNWK TPSSARHKRG CNCKRSMCLK KYCECYQANV GCSIGCRCEG CKNVFGKKED 660 YCVTEEIVNR GGGEISESTV AAKKDFLNPD LCDPHYLTPL TPSFQCSDHG KNAPKSRLLS 720 RRCLPSPESD LTILAKSPRS PRTSDSNDML LETSKENLDV GSYCEGINYN NADVLGDECH 780 HTPLPNHPSI IIGSTSSKAR ELTSLSRFPL GPKSGCLSSG GSLRWRSSPI TPMSSLDGTK 840 NLQGLDSDGL SDILEDDTPE ILKDTSTPNK SVKTSSPNGK RVSPPHNLLQ LGSSSSGPLR 900 SGRKFILKAV PSFPPLTPCI DLKGSSNQNR SSFQENSSND

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence

MDSPEPSKAP ISSSSAAASI SSSSPVQESP FSNYISSLSP IKHDKVPHVA QGFLGLNSPP  60
LVFTSPRINT LRRPQSSSAE VSQNGEGDKK NIDGPGRLER SVSELQQGLI TDIKKEDDTK  120
DSVSIQPSSS SGCVDEYLAD PVEADCANSE YSMNLNCKES NDAFQSSVNG LLETKNLKFT  180
DKNDVGREVD AAQLLSAQSE EGLERKLTSH VKPVKIEDEQ HAGQVKSDEC PEFESDVFDL  240
SSQEKECKNL DAQKVVEDYE DRCDGFLQLL PGSLQRVQAY EDFAENFEGV ADVTVDSMTN  300
DLEASEHQRG MSRRCLQFGE AQPEATANCS SSSLANGMIT SRSVATTSET EGLASSHVDL  360
SVISRQRQLV NLSHLAINMI PQHYGEKSSL TVSKPSGIGL HLNSIVNAIP MGRGGTSSMK  420
LAVDSMGIQG IKSASLMSCQ STENMESCSD AFEKVLAAPQ DGTLEAKACM IPGSAASESL  480
CTMESIECHT TLHRKMEISS EHGDGNEMFN QHSPKKKRKK SSNSTDGEGC KRCNCKKTKC  540
LKLYCDCFAA GIYCADPCSC QGCFNRPEYE DTVLETRQQI ESRNPLAFAP KIVQPVTEFP  600
VTSREDGNWK TPSSARHKRG CNCKRSMCLK KYCECYQANV GCSIGCRCEG CKNVFGKKED  660
YCVTEEIVNR GGGEISESTV AAKKDFLNPD LCDPHYLTPL TPSFQCSDHG KNAPKSRLLS  720
RRCLPSPESD LTILAKSPRS PRTSDSNDML LETSKENLDV GSYCEGINYN NADVLGDECH  780
HTPLPNHPSI IIGSTSSKAR ELTSLSRFPL GPKSGCLSSG GSLRWRSSPI TPMSSLDGTK  840
NLQGLDSDGL SDILEDDTPE ILKDTSTPNK SVKTSSPNGK RVSPPHNLLQ LGSSSSGPLR  900
SGRKFILKAV PSFPPLTPCI DLKGSSNQNR SSFQENSSND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	516	520	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-60	CPP family protein