PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277275.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 377aa    MW: 41935.1 Da    PI: 8.4362
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277275.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08140160526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd+C FaHg
  XP_021277275.1 140 ACPDFRK-GNCKKGDSCEFAHG 160
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MKRTAAPLRI RERCPKMMIG EPTRPNPTVK IPAWDPFNDP SANFPSVNYN CNAPNSPCPV  60
DYLTSLHRYL PSNDFESDSL SDDSDLPVDA FSCDHFRMYE FKVRRCARGR SHDWTECPYA  120
HPGEKARRRD PRKFHYSGTA CPDFRKGNCK KGDSCEFAHG VFECWLHPAR YRTQPCKDGT  180
SCKRRVCFFA HTPEQLRVLP QQSPRGNGAG SGDLDYLGSP IRHRLDFVSS PTSILASPPI  240
SPPSDSPPMS PCGSFNSASE LAASMRNLQL GKAKMTGACS WGLQMGSGFG SPRGSTLRSS  300
FCSSPSTPTR TPTRSGLGQF DLWEYNAFEE EPAMERVESG RDLRARMYAK LSKENSLDRL  360
DPTGSGPDVG WVSELVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-114C3H family protein