PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276979.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 607aa MW: 67246.9 Da PI: 7.2722

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276979.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.5e-06	322	336	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++G++C+F H+ XP_021276979.1 322 SGSCPRGEKCNFQHD 336 69************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MAPPRILLCG DVLGRLNQLF KRVNSVNKSA GPFDSLFCVG QFFPDETDRL DELMDYVEGR 60 AQIPLPTYFI GDYGVGAAKV LSAASKNSAN QGFKMDGFKI CDNLFWLKGS GKFTLHGLSV 120 AYLSGRQLSS GQQFGSYSED DIDALRAFAE EPGIVDLFLS NEWPSGVTNR AAVSDIPSGM 180 SDSSGSDSTV SQLVAEIKPR YHIAGTKGAF YAREPYSNVD AVHVTRFLGL ASVGNKEKQK 240 FLHALSPTPS SAMSAAEIST KPPNTTLSPY ALADQVDRPK EATKRAGDNA PDSQYWRYDV 300 SNKRQKHGNG DGNKVCFKFI SSGSCPRGEK CNFQHDVDAR EQFLRGVCLD FIIKGKCEKG 360 PDCNFKHSLQ DEGESYSRKR PGSGNNNAIR LKECWFCLSS PNVEIHLVTS IGENFYCALA 420 KGPLVQDHVL LIPVEHLPNT LCLSADGEIE LGKFQNSVKM YYKNQGKEAV FFEWISKRGT 480 HANLQAVPVP SSKAAALKDI FNLAAEKLGF EFVTKKFNNN SEGRKWLRTQ FDKNLSCFYV 540 ELPEGSILSH LVEENEKFPA QFGREVLAGL LNMADRADWR NCTLGKEEET KLAENFKKRF 600 EVFDPSH

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MAPPRILLCG DVLGRLNQLF KRVNSVNKSA GPFDSLFCVG QFFPDETDRL DELMDYVEGR  60
AQIPLPTYFI GDYGVGAAKV LSAASKNSAN QGFKMDGFKI CDNLFWLKGS GKFTLHGLSV  120
AYLSGRQLSS GQQFGSYSED DIDALRAFAE EPGIVDLFLS NEWPSGVTNR AAVSDIPSGM  180
SDSSGSDSTV SQLVAEIKPR YHIAGTKGAF YAREPYSNVD AVHVTRFLGL ASVGNKEKQK  240
FLHALSPTPS SAMSAAEIST KPPNTTLSPY ALADQVDRPK EATKRAGDNA PDSQYWRYDV  300
SNKRQKHGNG DGNKVCFKFI SSGSCPRGEK CNFQHDVDAR EQFLRGVCLD FIIKGKCEKG  360
PDCNFKHSLQ DEGESYSRKR PGSGNNNAIR LKECWFCLSS PNVEIHLVTS IGENFYCALA  420
KGPLVQDHVL LIPVEHLPNT LCLSADGEIE LGKFQNSVKM YYKNQGKEAV FFEWISKRGT  480
HANLQAVPVP SSKAAALKDI FNLAAEKLGF EFVTKKFNNN SEGRKWLRTQ FDKNLSCFYV  540
ELPEGSILSH LVEENEKFPA QFGREVLAGL LNMADRADWR NCTLGKEEET KLAENFKKRF  600
EVFDPSH