PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276951.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C2H2
Protein Properties Length: 268aa    MW: 29382.7 Da    PI: 8.7321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276951.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002188110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  XP_021276951.1  88 FSCNYCQRKFYSSQALGGHQNAH 110
                     89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGSLRKEPSP SESSCIISAP DEVKDRDQQE ARPSNIQLDL KLTTTSDCGN HRFNQELNLI  60
DSLKTAGSSD SSTAPETPQP TDAEQRVFSC NYCQRKFYSS QALGGHQNAH KRERTLAKRG  120
QRMGAHIAAS ATAFGHPYFH HNHYSSLASL PLHGAYNRSL GIQVHSMIHK PSHISSSTGF  180
GSVYGHHSWS RPPIDQQPAI GKLLMENPHV IPTGPTSRAS VGRFNITRSI MGSPADDEVI  240
GNCWWSGGGS LKTKQEDQMQ KVDLSLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.15e-62C2H2 family protein