PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276133.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 839aa    MW: 92368.9 Da    PI: 6.1805
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182078357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_021276133.1 20 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 78
                    5679*****************************************************97 PP
2START185.23.6e-581643722205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+s+g  g+++l 
  XP_021276133.1 164 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPTWFRDCRAVDVMNVLSTGngGTIELL 257
                     789*******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_021276133.1 258 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPTippAANFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 352
                     ********************************************9999*********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s++  ++kt++a+l+++++
  XP_021276133.1 353 ESSTLLAQKTTMAALRYLRQ 372
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    
MMVVTSSCKE GNKIAMDNGK YVRYTPEQVE ALERLYHECP KPSSIRRQQL IRECPILANI  60
EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYENSYF  120
RQQTQNATLA TTDTSCESVV TSGQHHLTPQ HPPRDASPAG LLSIAEETLT EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIVA ISHGCTGVAA RACGLVGLDP TRVAEILKDR PTWFRDCRAV  240
DVMNVLSTGN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VLEDGSLVVC ERSLNNTQNG  300
PTIPPAANFV RAEMLPSGYL IRPCEGGGSI IHIVDHMDLE PWSVPEVLRP LYESSTLLAQ  360
KTTMAALRYL RQISQEISQP NVTGWGRRPA ALRSLSQKLS KGFNEAVNGF TDEGWSMLES  420
DGVDDVTLLV NSSPGKMMGI NLSYSNGFPS MGNAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADSGIDA YSAAAVKAGP CSLPVSRGGS FGGQVILPLA HTIEHEEFME VIKLENMGHY  540
RDDMIMPGDI FLLQLCSGVD ENAVGTCAEL IFAPIDASFS DDAPIIPSGF RIIPLDSGMD  600
ASSPNRTLDL ASTLEVGAAG NRATGDHSGR CGSTKSVMTI AFQFVYEIHL QENVATMARQ  660
YVRSIIASVQ RVALALSPSR FGSHAGFRTP PGTPEAQTLA RWICDSYRCY LGVDLLKNEG  720
SESILKMLWH HTDAVLCCSL KALPVFTFAN QAGLDMLETT LVALQDISLE KIFDENGRKA  780
LFAEFPQVMQ QGFMCLQGGI CLSSMGRPVS YERAVAWKVV NDEENAHCIC FMFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0HD-ZIP family protein