PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275562.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 668aa MW: 77649.5 Da PI: 7.0661

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.2	2.8e-23	58	142	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn +Ake GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ ++el+HnH+++ XP_021275562.1 58 DFYNVFAKEQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMVVIKLVDSKRWRIVEVELDHNHQVS 142 6*******************999*************99888.....9********************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MEEVCLNSEP VFDEVDEYEG EGDCSVVEHD ETCAKLSKKE PLPPTVGLEF DSFDEAYDFY 60 NVFAKEQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMVVI 120 KLVDSKRWRI VEVELDHNHQ VSPQIKRFYK SHKKMILAAR KAQPPAEPVT EIHTIKMYRT 180 AALDAGSNGY PNVSEREGIH PADHSNHLEL KEGDAYAVYN YFCRMKLTNP NFFYLMDFDD 240 DGRLKNVFWA DARSRTACAY FCDTIVIDTT CLASKYEIPL ISFVGVNHHG QSVLLGCGFL 300 GHESVEYFVW IFRAWLKCML GHPPQVIVTD QCKPLQIAVS EVFPKAHHCY CVWYIMHRVP 360 EKLGGLKGFE AIKRQLNKAV YNSLRIVEFE TSWAEVIKQH GLGDNKWLQT LYEDRKQWVP 420 VYLKDTFFAG TIPIQENESL NAFFDGYVHK HTSFKEFVDK YDLALHRKHL KEAMADMQSR 480 NSCFELKTRC NFEVQLSKVY TKEIFNKFQS EVEGMYSCFN TRQVSINGPI ITYIVKERVE 540 IEGNEKEVRN YEVLFETSQV DIRCICSLFN YKGYLCRHAL NVLNYNGVEE IPSRYILPRW 600 CKDFKYRHVD RGSCDINVYN PVYWHNHLHK YAIPVVEGGA QSQEHYKIAL HELQELLNRF 660 NLVEDSLV

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MEEVCLNSEP VFDEVDEYEG EGDCSVVEHD ETCAKLSKKE PLPPTVGLEF DSFDEAYDFY  60
NVFAKEQGFG IRVSNSWFRS KRKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMVVI  120
KLVDSKRWRI VEVELDHNHQ VSPQIKRFYK SHKKMILAAR KAQPPAEPVT EIHTIKMYRT  180
AALDAGSNGY PNVSEREGIH PADHSNHLEL KEGDAYAVYN YFCRMKLTNP NFFYLMDFDD  240
DGRLKNVFWA DARSRTACAY FCDTIVIDTT CLASKYEIPL ISFVGVNHHG QSVLLGCGFL  300
GHESVEYFVW IFRAWLKCML GHPPQVIVTD QCKPLQIAVS EVFPKAHHCY CVWYIMHRVP  360
EKLGGLKGFE AIKRQLNKAV YNSLRIVEFE TSWAEVIKQH GLGDNKWLQT LYEDRKQWVP  420
VYLKDTFFAG TIPIQENESL NAFFDGYVHK HTSFKEFVDK YDLALHRKHL KEAMADMQSR  480
NSCFELKTRC NFEVQLSKVY TKEIFNKFQS EVEGMYSCFN TRQVSINGPI ITYIVKERVE  540
IEGNEKEVRN YEVLFETSQV DIRCICSLFN YKGYLCRHAL NVLNYNGVEE IPSRYILPRW  600
CKDFKYRHVD RGSCDINVYN PVYWHNHLHK YAIPVVEGGA QSQEHYKIAL HELQELLNRF  660
NLVEDSLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein