PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275325.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Protein Properties

Length: 278aa MW: 30693.4 Da PI: 11.0088

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.5	8.1e-21	17	101	2	93
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 fkvl + ++ l++p f+++++g+ ++ tl++ sg +W+v++ +++ g+y++ +GW++Fv+++gL++gDfvvF l+g+s+f +v XP_021275325.1 17 FKVL--IGLFFNK-LRIPPAFVKNFQGNVPT--SFTLKSNSGSTWRVTV--QNTEGSYFFCGGWSNFVEDQGLDSGDFVVFNLVGKSSFDCV 101 5555..4445554.99****999777555..59999*******..*******************************99999766 PP
2	B3	47.8	2.7e-15	188	269	13	98
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + +v+p +fa+e g+ ++s +++d++gr W + + + +s+++ l++GW++F +n++ +gD+++F++++ ++ +v ++ XP_021275325.1 188 KFSVVVPSRFAREAGLADKRS--TVIKDPKGRMWPLGI--SVGSRQVRLSAGWSNFRLENRIVAGDTLLFQHIRGTGNAIHVEIVG 269 45689*******9886665..8889*******..*******************************9888878888865 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
MEALKMAGEL KQNPSFFKVL IGLFFNKLRI PPAFVKNFQG NVPTSFTLKS NSGSTWRVTV 60 QNTEGSYFFC GGWSNFVEDQ GLDSGDFVVF NLVGKSSFDC VIYDPTGCEK KIVLKAKRKR 120 GRPKKSNEVT PSETAASSFQ KAKRVSPGCR ITRAPARRVI NVGQQIEVVS EAISKHPSFI 180 VVLKKYQKFS VVVPSRFARE AGLADKRSTV IKDPKGRMWP LGISVGSRQV RLSAGWSNFR 240 LENRIVAGDT LLFQHIRGTG NAIHVEIVGK AGYGNSGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	120	KKIVLKAKRKR
2	117	143	KRKRGRPKKSNEVTPSETAASSFQKAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	4e-19	B3 family protein