PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275188.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 562aa MW: 60571.8 Da PI: 7.2687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275188.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.2	9.6e-16	351	397	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_021275188.1 351 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 397 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MHHCVPDFEM GDDYSIPSSS SLTRPKKPPM PEDEIMELLW QNGQVVVQSQ NQRSFKKSPP 60 FKFHDADQSA PKEIRSSSSH HQHHQQQQQQ SITDHLFMQE DEMASWLHYP LNDANFDHDF 120 CADLLYPSSS AAAATPCITS TATAAPPPLG RVSQVSASAS ASAAAAASAP RPAIPPARRN 180 GSEPTRTKNF VHFSRHKTAT VEQSGPSNSK SVVRESTVVD SSDTPAMAPE SRASQAVPSN 240 TEAASGGNNN NACATVSAAA VASRQSAGVS VGATKDNLAT CEVTVTSSPG GSSASAEQAT 300 QKAAPAEDRK RKGIEPDDAE CHSEDAEFES ADIKKQTRGS TSTKRSRAAE VHNLSERRRR 360 DRINEKMRAL QELIPRCNKS DKASMLDEAI EYLKSLQLQV QMMSMGCGMV PMMFPGVQQY 420 MPTMGMGIGM GMGMDMGISR PMLPFPNVLA GSVLPTPAAA AHLGPRFPLP AFHMPPPVPP 480 PDPSRIQPNN QSEAMLNTLG MQNPTQPRAP NFADPYQQYL GLQQMQLPPL QSQGMAQPSS 540 RKPSSSRGAE NLKNHPSGEM TR

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MHHCVPDFEM GDDYSIPSSS SLTRPKKPPM PEDEIMELLW QNGQVVVQSQ NQRSFKKSPP  60
FKFHDADQSA PKEIRSSSSH HQHHQQQQQQ SITDHLFMQE DEMASWLHYP LNDANFDHDF  120
CADLLYPSSS AAAATPCITS TATAAPPPLG RVSQVSASAS ASAAAAASAP RPAIPPARRN  180
GSEPTRTKNF VHFSRHKTAT VEQSGPSNSK SVVRESTVVD SSDTPAMAPE SRASQAVPSN  240
TEAASGGNNN NACATVSAAA VASRQSAGVS VGATKDNLAT CEVTVTSSPG GSSASAEQAT  300
QKAAPAEDRK RKGIEPDDAE CHSEDAEFES ADIKKQTRGS TSTKRSRAAE VHNLSERRRR  360
DRINEKMRAL QELIPRCNKS DKASMLDEAI EYLKSLQLQV QMMSMGCGMV PMMFPGVQQY  420
MPTMGMGIGM GMGMDMGISR PMLPFPNVLA GSVLPTPAAA AHLGPRFPLP AFHMPPPVPP  480
PDPSRIQPNN QSEAMLNTLG MQNPTQPRAP NFADPYQQYL GLQQMQLPPL QSQGMAQPSS  540
RKPSSSRGAE NLKNHPSGEM TR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	361	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	9e-60	bHLH family protein