PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273896.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 360aa MW: 40634 Da PI: 6.3168

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273896.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39	1.4e-12	184	230	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK +Ka++L A++Y+k+Lq XP_021273896.1 184 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYLKQLQ 230 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MEISSGKWLS ELEMEDSTFL PQYQMMNPMD YSFDDLNFQS FSSESYSSYQ NIDQKISSHN 60 NMNDSCIGAS HQVDDFQRPM KQLKTNSPNS CITENIPPKA SSSPSSHIIS FDNWNSSPAI 120 SQQYYGLDCA VKPKNEVGYD GNCIEFPSNL IPQNAYKDQY CSPKYGQASK RVGSLTRTPL 180 HAQDHVIAER KRREKLSQRF ISLSALIPGL KKTDKASVLG DAIKYLKQLQ ERVTTLEGQV 240 AKKTMESVIF VKKTQIFADD ETSSSDENFD SHSNKPLPEI EARVADKDVL IRIHCEKNKG 300 CIPNIINEVE KLHLSVLNTN VLPFGQATQD ITIVVQMEAE FSMTMKDLVK SLRTALLKFM

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MEISSGKWLS ELEMEDSTFL PQYQMMNPMD YSFDDLNFQS FSSESYSSYQ NIDQKISSHN  60
NMNDSCIGAS HQVDDFQRPM KQLKTNSPNS CITENIPPKA SSSPSSHIIS FDNWNSSPAI  120
SQQYYGLDCA VKPKNEVGYD GNCIEFPSNL IPQNAYKDQY CSPKYGQASK RVGSLTRTPL  180
HAQDHVIAER KRREKLSQRF ISLSALIPGL KKTDKASVLG DAIKYLKQLQ ERVTTLEGQV  240
AKKTMESVIF VKKTQIFADD ETSSSDENFD SHSNKPLPEI EARVADKDVL IRIHCEKNKG  300
CIPNIINEVE KLHLSVLNTN VLPFGQATQD ITIVVQMEAE FSMTMKDLVK SLRTALLKFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	194	ERKRRE
2	190	195	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-64	bHLH family protein