PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273620.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 402aa MW: 45701 Da PI: 6.1992

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273620.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.5	2.9e-35	14	104	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d+ +++l+ ws++g sf+v+++ +f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF++++F +g+k+ll++ XP_021273620.1 14 FLTKTYEMVDDPMTNSLVGWSATGYSFIVWNPPDFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANEEFIRGEKHLLQN 99 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_021273620.1 100 IHRRK 104 *98 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MDESQGSSNA PPPFLTKTYE MVDDPMTNSL VGWSATGYSF IVWNPPDFSR DLLPRYFKHN 60 NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGEKHLLQNI HRRKPIHSHS LVHQGNSGLP 120 LTEIEKKEFE EEIKRLSQDK SRLQLQLQRH QIENQEFEFQ IRLLSERFQN MENRQRRAMV 180 FLGQLIHKPH LVSIFNQKAE LHNKKRKLLN LNHFIDGYNT VEHHSLTSQD ANLGAPSAPV 240 LNLEQIEKLD SSIKCLETLF HGIGETMDEK VYDFGISSRP SPIDVTELQT SSGDYDVDGE 300 LCSPSSHPCS PHSTDINSSP ELAVSVYKAD SPPTPSFHHI ANRNPKSFGI GVTSKHATPP 360 ETVPGKVNDV FWEQFLTEVP NSLDAQEIQS DPGTTSGRIS GS

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MDESQGSSNA PPPFLTKTYE MVDDPMTNSL VGWSATGYSF IVWNPPDFSR DLLPRYFKHN  60
NFSSFVRQLN TYGFRKIDPD QWEFANEEFI RGEKHLLQNI HRRKPIHSHS LVHQGNSGLP  120
LTEIEKKEFE EEIKRLSQDK SRLQLQLQRH QIENQEFEFQ IRLLSERFQN MENRQRRAMV  180
FLGQLIHKPH LVSIFNQKAE LHNKKRKLLN LNHFIDGYNT VEHHSLTSQD ANLGAPSAPV  240
LNLEQIEKLD SSIKCLETLF HGIGETMDEK VYDFGISSRP SPIDVTELQT SSGDYDVDGE  300
LCSPSSHPCS PHSTDINSSP ELAVSVYKAD SPPTPSFHHI ANRNPKSFGI GVTSKHATPP  360
ETVPGKVNDV FWEQFLTEVP NSLDAQEIQS DPGTTSGRIS GS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45710.1	1e-68	HSF family protein