PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020706025.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 422aa MW: 45803.8 Da PI: 6.379

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020706025.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	2.9e-13	261	306	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L XP_020706025.1 261 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKDL 306 799*********************6.....4**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MDELISPSSS CSPPQHPPPP PFFSAHPIPV NSPEAQPPPP PSALQYRIQC LLHSRPEWWT 60 YAIFWRTSSD LTVLCFGDGH FRGTRDDDRK RAAAAVTAVG DVANDSDDAE WFYVVSLTRW 120 FSVGAATAPA RAYASLAPIW LAGAHALQTC GCERSSEAQL HGIETLVFIP AAGGVLELGS 180 GDLVGENWAL VQQAKSLLFA PDDADPVYSV VNRAQVGNLA GGSSSVDSEH SDSEGPGLMV 240 ERRRPKKRGR KPGSVRESPV NHVEAERQRR EKLNHRFYAL RSVVPNVSRM DKASLLADAV 300 SYIKDLRAKV EELEAEAKRG RKEVAVEKGG SPTSTISGGP ATVEVEVKLL CSDAMIRVQS 360 ENLSHPPARL MAALRDLDLL VHHATVSGLK EMVIQDVVVQ VPDALQGEDN LRCALLARLE 420 KN

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MDELISPSSS CSPPQHPPPP PFFSAHPIPV NSPEAQPPPP PSALQYRIQC LLHSRPEWWT  60
YAIFWRTSSD LTVLCFGDGH FRGTRDDDRK RAAAAVTAVG DVANDSDDAE WFYVVSLTRW  120
FSVGAATAPA RAYASLAPIW LAGAHALQTC GCERSSEAQL HGIETLVFIP AAGGVLELGS  180
GDLVGENWAL VQQAKSLLFA PDDADPVYSV VNRAQVGNLA GGSSSVDSEH SDSEGPGLMV  240
ERRRPKKRGR KPGSVRESPV NHVEAERQRR EKLNHRFYAL RSVVPNVSRM DKASLLADAV  300
SYIKDLRAKV EELEAEAKRG RKEVAVEKGG SPTSTISGGP ATVEVEVKLL CSDAMIRVQS  360
ENLSHPPARL MAALRDLDLL VHHATVSGLK EMVIQDVVVQ VPDALQGEDN LRCALLARLE  420
KN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	251	RRPKKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	9e-57	bHLH family protein