PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705787.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CO-like

Protein Properties

Length: 385aa MW: 42238 Da PI: 6.4936

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705787.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.5	5.7e-08	2	36	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkgH 37 ++ C++++ ++ ++C+++q lC +C ++H+ XP_020705787.2 2 NPLCNLCGARRALIYCKSDQARLCLSCDASIHSAN 36 579****99*******************663 PP
2	CCT	57.4	5.2e-20	330	373	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a+ RY++K+k+R++eK+irY+sRKa A++R+R+KGrFvk+ XP_020705787.2 330 RNEAKIRYNDKKKSRLYEKRIRYASRKASADTRKRLKGRFVKAG 373 999**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MNPLCNLCGA RRALIYCKSD QARLCLSCDA SIHSANTISS GHIRAQLCDC CNSHQANFLC 60 HDDHLALCSL CGLAVDPRRC IPVRFYSDCP SSAELSAIFL AASDPTVANY ALWKVPFVSK 120 AVLSGLANPM EIEPTWIPST TSCIAPDLIS VFPSGEGQAL FLPQDSNVQN LPDGLEIGEG 180 EFNVDHNEMF GGQRLNANLP VHDLVSSEMF MENNLPVADS NCHLENVVQA SSMPHDGLHA 240 LPSCMVAVSN FVQAANGDAN QLLLDQSGNV NINLSFHPPN ASPNMPFLLL NPITGDSSAA 300 PYQDHGVSPI ILPEKLTWNS NNEIRFSRTR NEAKIRYNDK KKSRLYEKRI RYASRKASAD 360 TRKRLKGRFV KAGDAYDYDP LLMKM

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MNPLCNLCGA RRALIYCKSD QARLCLSCDA SIHSANTISS GHIRAQLCDC CNSHQANFLC  60
HDDHLALCSL CGLAVDPRRC IPVRFYSDCP SSAELSAIFL AASDPTVANY ALWKVPFVSK  120
AVLSGLANPM EIEPTWIPST TSCIAPDLIS VFPSGEGQAL FLPQDSNVQN LPDGLEIGEG  180
EFNVDHNEMF GGQRLNANLP VHDLVSSEMF MENNLPVADS NCHLENVVQA SSMPHDGLHA  240
LPSCMVAVSN FVQAANGDAN QLLLDQSGNV NINLSFHPPN ASPNMPFLLL NPITGDSSAA  300
PYQDHGVSPI ILPEKLTWNS NNEIRFSRTR NEAKIRYNDK KKSRLYEKRI RYASRKASAD  360
TRKRLKGRFV KAGDAYDYDP LLMKM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	368	RKRLKGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	4e-54	CO-like family protein