PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705705.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 651aa MW: 72047 Da PI: 5.0068

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.5e-12	457	502	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr ++P+ K++Ka+ L A+ YIk++ XP_020705705.1 457 NHVEAERMRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYIKEM 502 799*********************6.....5**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence
MNLWTDDNAS MMDAFMASTE VQIFPWTPAP APAPEAHVPA FSSASAGVPE YFTQESLQQR 60 LHMLIEGARD SWTYAIFWQS SVDVGFGASI LGWGDGYYKG CEEDKRRRRN ATSSSVAEQE 120 HRKRVLRELN SLISGSGSSP DSAMEEEVTD TEWFFLVSMT QSFVNGSGLP GQSFLTGAPS 180 WIVGKDRLSI APCDRAKQAQ VFGLQSMVCV PVESGVLELG STELIFHSAD MMNQVKALFN 240 FNSFEAPEAG SWPPSQPVTP AMTDQGDTDP SAMWISDPFI EIKDSVSPAV AEISVTEPQF 300 QLENPSTSSL TENHASIPPQ QPQQNPHQVQ QPPSFYTREL NISDFGITSA DPRQSFKLEP 360 GDALNFGESL RNSSPAPATP GFLSNEKRKT KSSNNEEGML SFISPSHAKP LATTQDSDNS 420 DLEASIREVE STRAAEPEKR PKKRGRKPAN GRDEPLNHVE AERMRREKLN QRFYALRAVV 480 PNVSKMDKAS LLGDAISYIK EMRSKLQTLE NEKEELVSNV ETLKKERDAA PVRIQDKEPS 540 IASRNSRCVG LEIEVKILGA EALIRLQCDK RNHPAARLMA ALKELDLELY YASISVVKDL 600 MIQQATVKMP GRGYTQEQLT AVLYSRLADP TPEVTVTPCN QISHFNKPKP M

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence

MNLWTDDNAS MMDAFMASTE VQIFPWTPAP APAPEAHVPA FSSASAGVPE YFTQESLQQR  60
LHMLIEGARD SWTYAIFWQS SVDVGFGASI LGWGDGYYKG CEEDKRRRRN ATSSSVAEQE  120
HRKRVLRELN SLISGSGSSP DSAMEEEVTD TEWFFLVSMT QSFVNGSGLP GQSFLTGAPS  180
WIVGKDRLSI APCDRAKQAQ VFGLQSMVCV PVESGVLELG STELIFHSAD MMNQVKALFN  240
FNSFEAPEAG SWPPSQPVTP AMTDQGDTDP SAMWISDPFI EIKDSVSPAV AEISVTEPQF  300
QLENPSTSSL TENHASIPPQ QPQQNPHQVQ QPPSFYTREL NISDFGITSA DPRQSFKLEP  360
GDALNFGESL RNSSPAPATP GFLSNEKRKT KSSNNEEGML SFISPSHAKP LATTQDSDNS  420
DLEASIREVE STRAAEPEKR PKKRGRKPAN GRDEPLNHVE AERMRREKLN QRFYALRAVV  480
PNVSKMDKAS LLGDAISYIK EMRSKLQTLE NEKEELVSNV ETLKKERDAA PVRIQDKEPS  540
IASRNSRCVG LEIEVKILGA EALIRLQCDK RNHPAARLMA ALKELDLELY YASISVVKDL  600
MIQQATVKMP GRGYTQEQLT AVLYSRLADP TPEVTVTPCN QISHFNKPKP M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	439	447	KRPKKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-169	bHLH family protein