PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020705488.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 379aa    MW: 42492.8 Da    PI: 5.858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020705488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.85.1e-052633011255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  XP_020705488.1 263 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 301
                     7788899*********998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MDSSNLLDLR HQPEELLLLH ASTALNWNQD PLLYGIELIP SISTSFSNSK DEDQLIDPPP  60
FAPSHHMVED HGFQWTVHNP HSAQQIHLAK IKEEISIESF LKLEQYKLSS AVLKHEEQRQ  120
QNDLNVYQPS PPIHGHQGLD PLSFGMLLPG LNIPNIYLPS METSLGMDIE ALDFLASARF  180
GRIGSCQSSN LNTSTYFDNM NYGLSHQLHS PAQGGFVNLQ EIPPSVSGLS ERKRANYSSL  240
DQLQPSRKPR FDSRPSITPF KVRKEKLGDR IAALQQLVAP FGKTDTASVL MEAIGYIKFL  300
QDQVETLSVP YMGTSSNRNF RTTEELACYQ HFLGAQESTT KERDDSKPDL RSRGLCLVPL  360
SCTSYVTNDN AVWSPPNFT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-44bHLH family protein