PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020705404.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 434aa MW: 48461.6 Da PI: 6.1976

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020705404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	7.3e-07	209	230	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_020705404.1 209 FCSICGKGFKRDANLRMHMRGH 230 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MERKLRPSEI SAENSRLLPL EIQSFLLNSS RDQIVRNSTG DWDVKTILNN LSFLEQKIHQ 60 VQDIIGSIVN EKSEITLRPN EFAIQQQIVT TDLTSIIVDL ISTAGNLLPS IKKNLLSSKP 120 PPDQFCSKLS SSTSLKVDTP LPKYEQTSLE KEKSASLGDC DGEPHELDHI EDHDVKGSED 180 GAELDNLPLG SYEVLQLEKE EILAPHTHFC SICGKGFKRD ANLRMHMRGH GDEYKTPAAL 240 AKPMKDSDST IIKRYSCPFV GCKRNKEHKS FQPLKTLLCV RNHYKRSHCE KSYMCGRCLT 300 KKFSVLADLK THEKHCGLDK WLCSCGTTFS RKDKLFGHVA LFQGHSPVLP TDEGCYGSGS 360 AEHRNDYKVG VEEDGIGYFF SSNSDNGVIY DTQTCDDGLG YLSTLSFEPN DYGVSDEFMK 420 ATSGLIENSS FLSS

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MERKLRPSEI SAENSRLLPL EIQSFLLNSS RDQIVRNSTG DWDVKTILNN LSFLEQKIHQ  60
VQDIIGSIVN EKSEITLRPN EFAIQQQIVT TDLTSIIVDL ISTAGNLLPS IKKNLLSSKP  120
PPDQFCSKLS SSTSLKVDTP LPKYEQTSLE KEKSASLGDC DGEPHELDHI EDHDVKGSED  180
GAELDNLPLG SYEVLQLEKE EILAPHTHFC SICGKGFKRD ANLRMHMRGH GDEYKTPAAL  240
AKPMKDSDST IIKRYSCPFV GCKRNKEHKS FQPLKTLLCV RNHYKRSHCE KSYMCGRCLT  300
KKFSVLADLK THEKHCGLDK WLCSCGTTFS RKDKLFGHVA LFQGHSPVLP TDEGCYGSGS  360
AEHRNDYKVG VEEDGIGYFF SSNSDNGVIY DTQTCDDGLG YLSTLSFEPN DYGVSDEFMK  420
ATSGLIENSS FLSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-139	C2H2 family protein