PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704554.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 732aa MW: 82748.4 Da PI: 4.9092

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704554.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00072	568	605	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+a K s + Le++v+++ Lq XP_020704554.1 568 RQLIQDRIRELRELIPNA-----SKCSIDALLEQTVKHMIFLQ 605 67799************9.....46666666666666665555 PP

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence
MGSATALNQL LRNLCHRSMW KYAILWKFRD ENHMLLTCED SYAIDKKLDI AMEHAQYKEF 60 NSYHPFGSEA IGQNGNIPAC SILVAVFNMT RFSYLLGEGR IVGKVASMER HQWICVGEMN 120 SELLLEYPEE LGLQVTAGIK TILLLPVLPL GLLQLGSVDK LSEDLTMVAQ LKEFFCAYQN 180 ALDSNSTFDL RMGQIESYMA LNRPLLEKYS TCLEINTNLT DLIQAQPFLA PDLATLCFDE 240 VASVRLPHPM VQSYDPFTQV GFHQAHGLGI DRLDEISGNA MYIELFQDHS EEQVILNTST 300 LSGRTMESDR LPTHHEEVKT IPVIRQGLTL KSPTMFDAYM KVQQCDDFCD FDKVNLKFAH 360 EFDVVTNSTT ESRNLDFSVE SGLHKVMGQN CLMGWNNSAW VEMLSIEGVG SELITSFKAE 420 VPEIIVYSVE EPCVVDENRT EYLAQISMVE LASVSDDKEL DSCECCKSRC SSSGRCSESC 480 LTQCKTEDVS NSEDSGLVGH KMPSLIPDSE GTSYCTTCPE RSSVHMALKN EDHENIVCGS 540 WRSCLDESHG SNRQVKNRDP HRPRPRDRQL IQDRIRELRE LIPNASKCSI DALLEQTVKH 600 MIFLQSVPTH ADKLSQSTRS KVGEKDLNFH GTQVTENGAS WACKVGTTWK PFPLVVENLD 660 QPDQMLVEMQ CRNHGLFLDI AQAIKRLGLT ILRGILESRL EQLWAHFIIE IPKGFQRMDI 720 VWPLMQLLQL NF

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence

MGSATALNQL LRNLCHRSMW KYAILWKFRD ENHMLLTCED SYAIDKKLDI AMEHAQYKEF  60
NSYHPFGSEA IGQNGNIPAC SILVAVFNMT RFSYLLGEGR IVGKVASMER HQWICVGEMN  120
SELLLEYPEE LGLQVTAGIK TILLLPVLPL GLLQLGSVDK LSEDLTMVAQ LKEFFCAYQN  180
ALDSNSTFDL RMGQIESYMA LNRPLLEKYS TCLEINTNLT DLIQAQPFLA PDLATLCFDE  240
VASVRLPHPM VQSYDPFTQV GFHQAHGLGI DRLDEISGNA MYIELFQDHS EEQVILNTST  300
LSGRTMESDR LPTHHEEVKT IPVIRQGLTL KSPTMFDAYM KVQQCDDFCD FDKVNLKFAH  360
EFDVVTNSTT ESRNLDFSVE SGLHKVMGQN CLMGWNNSAW VEMLSIEGVG SELITSFKAE  420
VPEIIVYSVE EPCVVDENRT EYLAQISMVE LASVSDDKEL DSCECCKSRC SSSGRCSESC  480
LTQCKTEDVS NSEDSGLVGH KMPSLIPDSE GTSYCTTCPE RSSVHMALKN EDHENIVCGS  540
WRSCLDESHG SNRQVKNRDP HRPRPRDRQL IQDRIRELRE LIPNASKCSI DALLEQTVKH  600
MIFLQSVPTH ADKLSQSTRS KVGEKDLNFH GTQVTENGAS WACKVGTTWK PFPLVVENLD  660
QPDQMLVEMQ CRNHGLFLDI AQAIKRLGLT ILRGILESRL EQLWAHFIIE IPKGFQRMDI  720
VWPLMQLLQL NF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-39	bHLH family protein