PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020704390.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 333aa MW: 37073.1 Da PI: 5.5795

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020704390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	145	190	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +ErrRR+++ ++f L ++P + kK++Ka++L Av++Ik+L+ XP_020704390.1 145 HILAERRRREKLSERFVALAAIIPGL-----KKMDKASVLGDAVKHIKELE 190 8889********************.....9**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MESRTFHWVS DLGLDDAAGF IMQQELSNLN QYSPQELISA SYDNDLQQSI SSSESFTLNP 60 SVYSVEKFME ASQGMYKADQ NGIFLVPDAP FLLSFNQSQV ENINIYDADV PKDICIKRKG 120 GVVNGETERK KMRMGLGQAA YALDHILAER RRREKLSERF VALAAIIPGL KKMDKASVLG 180 DAVKHIKELE ERVKNLEEEK IERKAVEIAT MNIIKPCHDH SNDCESPISS VENNNIINSS 240 SSHDQKLHPH HIKVKICDKA VLVNIHCENH KGVLAKLASD IEDLHLMVSN FSAVPFMGSS 300 FLDITVAAQV EDGSFITVED VAKKLNAALS QCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	154	ERRRRE
2	150	155	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	7e-33	bHLH family protein