PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703717.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 488aa MW: 54802.9 Da PI: 6.7933

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.9	4.4e-20	94	180	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++YA+++ Fsvrk++++ + ++i++++f+Csk+g+++ ++++ +k + +r+ trtgC a+++ ++dg+w v+k + HnHela XP_020703717.1 94 YCQYAHSTRFSVRKDHHHFWPNIRKIKSKDFMCSKSGFKKANESD-TKVKYRRSCTRTGCPAMVRFLVSQDGVWAVNKSIESHNHELA 180 99**************************************999.999999********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MLDSLYGSYN SHIPHERNRE VFEEMDGSNV DFAFEDLVNF EETPTLTFDE AFSELIQYYR 60 SLLGMNSFLA RYNVSIHYYR SGVYNSKKEA YEKYCQYAHS TRFSVRKDHH HFWPNIRKIK 120 SKDFMCSKSG FKKANESDTK VKYRRSCTRT GCPAMVRFLV SQDGVWAVNK SIESHNHELA 180 RPDDQHLLKL SRSISDDNAA ILKSMSEVGI RTVDAFTYLS NEVGGVGNLG FKKQDAYNYI 240 QKERIAKIET GDTNSLIKLF KKRAIDDNIF AWDVETDEDG CLLNFFWVDD LGRIDYAYFG 300 DVIIFNNSYR LNKYNLACAP VVGVNNHWQN VLLGVAFLSD ETIASFTWLF RTFIKIMDNK 360 HPITIFIDQD QAMARAIEIA LHHARHRLCQ WHLYKEAPSN YHIVKLGTTR YHSVLLGIDI 420 VPNFSVVQEG LVVGGGAGLG VVSSAAGSSL VEVGVGSGAG ASSFSVVGDG SVVVGGASSL 480 VEVGAVLV

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MLDSLYGSYN SHIPHERNRE VFEEMDGSNV DFAFEDLVNF EETPTLTFDE AFSELIQYYR  60
SLLGMNSFLA RYNVSIHYYR SGVYNSKKEA YEKYCQYAHS TRFSVRKDHH HFWPNIRKIK  120
SKDFMCSKSG FKKANESDTK VKYRRSCTRT GCPAMVRFLV SQDGVWAVNK SIESHNHELA  180
RPDDQHLLKL SRSISDDNAA ILKSMSEVGI RTVDAFTYLS NEVGGVGNLG FKKQDAYNYI  240
QKERIAKIET GDTNSLIKLF KKRAIDDNIF AWDVETDEDG CLLNFFWVDD LGRIDYAYFG  300
DVIIFNNSYR LNKYNLACAP VVGVNNHWQN VLLGVAFLSD ETIASFTWLF RTFIKIMDNK  360
HPITIFIDQD QAMARAIEIA LHHARHRLCQ WHLYKEAPSN YHIVKLGTTR YHSVLLGIDI  420
VPNFSVVQEG LVVGGGAGLG VVSSAAGSSL VEVGVGSGAG ASSFSVVGDG SVVVGGASSL  480
VEVGAVLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-58	FAR1 family protein