PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703673.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 879aa MW: 96484.2 Da PI: 7.6566

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.1	3.9e-19	366	465	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_020703673.1 366 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGIPLKIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRID-PEGK 458 99************************666778899***********99899999999.*******************987.7777 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_020703673.1 459 LVMGFRK 465 7777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 879 aa Download sequence
MSTKRCMNGV CGAAAAAGAV WRKGWLLRSG GFATLCDKCG LAYEKLVFCE SFHQKESGWR 60 ECAFCGKRLH CGCIASKSML DLLDGGGVQC LMCLKNYGNS SIPGEPVHDL LPQSSQRILA 120 LSARCSINEK MNEFGTPPVN GSSELQITCS DRIITDDATT KCNLMHLGRD IDVNGYNTML 180 LAQRESTNGS FSHVKKEQFA FNRGDLGRSG CSGKGQGTLG LPQSYGSDSK DALKDYLSNP 240 LAEACLSMSL GGSNTGNILE ACSNAGARQI TLSHHGIVDD GRDQSKVLAT FQNVQRARHV 300 LPKLPKAIHG VTSDASKELV PQMRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGDSNS 360 TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG IPLKIQDAKG KEWHFQFRFW 420 PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPEGKLV MGFRKATNTV PLQEAQISAL 480 ATGALGSETF YSSVNVNLLT DKHGSWANEG LLQPLLTPEK RRSRNIGSKS KRLLIDDEDA 540 MELKLSWEEA QDLLRPPPRV QPSIVIIEDQ EFEEYEEPPV LGKRTFFTAR TSGGQDQWIQ 600 CDDCLKWRRI PVEFLPPSKW TCTENTWDLK RSSCAVPDEL TAREVQDLLR QHAELKRQRI 660 TSSKQSPSEA ESTGLDALAT AVAQGEAGNQ ASPSAAATTR HPRHRPGCTC IVCIQPPSGK 720 GPKHSPSCTC NVCMTVKRRF KTLMMRKKKR QSEREEAEVN KKQSWGSREE LEGTSSSLKE 780 REGDLLEGHI DLNCQPQRDA EQRVTDSPSL PQMSMMSLLQ VASLPLENYL KQNRLASLTT 840 SDQQVSSGSA TVPQAPIESE SGGDDDQCGS DKVRTDAAI

Sequence ? help Back to Top

Protein Sequence Length: 879 aa Download sequence

MSTKRCMNGV CGAAAAAGAV WRKGWLLRSG GFATLCDKCG LAYEKLVFCE SFHQKESGWR  60
ECAFCGKRLH CGCIASKSML DLLDGGGVQC LMCLKNYGNS SIPGEPVHDL LPQSSQRILA  120
LSARCSINEK MNEFGTPPVN GSSELQITCS DRIITDDATT KCNLMHLGRD IDVNGYNTML  180
LAQRESTNGS FSHVKKEQFA FNRGDLGRSG CSGKGQGTLG LPQSYGSDSK DALKDYLSNP  240
LAEACLSMSL GGSNTGNILE ACSNAGARQI TLSHHGIVDD GRDQSKVLAT FQNVQRARHV  300
LPKLPKAIHG VTSDASKELV PQMRVARPPA EGRGRNQLLP RYWPRITDQE LQQISGDSNS  360
TIVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG IPLKIQDAKG KEWHFQFRFW  420
PNNNSRMYVL EGVTPCIQSL QLQAGDTVTF SRIDPEGKLV MGFRKATNTV PLQEAQISAL  480
ATGALGSETF YSSVNVNLLT DKHGSWANEG LLQPLLTPEK RRSRNIGSKS KRLLIDDEDA  540
MELKLSWEEA QDLLRPPPRV QPSIVIIEDQ EFEEYEEPPV LGKRTFFTAR TSGGQDQWIQ  600
CDDCLKWRRI PVEFLPPSKW TCTENTWDLK RSSCAVPDEL TAREVQDLLR QHAELKRQRI  660
TSSKQSPSEA ESTGLDALAT AVAQGEAGNQ ASPSAAATTR HPRHRPGCTC IVCIQPPSGK  720
GPKHSPSCTC NVCMTVKRRF KTLMMRKKKR QSEREEAEVN KKQSWGSREE LEGTSSSLKE  780
REGDLLEGHI DLNCQPQRDA EQRVTDSPSL PQMSMMSLLQ VASLPLENYL KQNRLASLTT  840
SDQQVSSGSA TVPQAPIESE SGGDDDQCGS DKVRTDAAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	737	748	KRRFKTLMMRKK
2	737	750	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein