PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703327.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

TCP

Protein Properties

Length: 373aa MW: 40564.5 Da PI: 9.1101

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703327.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.6	1.9e-33	42	173	3	129
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssaseceaesssssasnsssgkaaks 93 g+kdrhsk+ T +g+RdRRvRls+++a++f+dLqd+LG+d++sk+++WL+++a ai +l+++ + ++++e +++s + + + +++ ++++ XP_020703327.1 42 GGKDRHSKVWTVKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVDWLIKAAADAIVDLPELvgpfPVPPSMEL-PARSMQRGTAGEKHLSQSK 135 78**************************************************************98866666555.4444444444455555666 PP TCP 94 aakskksqksaasalnlak.esrakararare.rtrek 129 +++s+ s++s+ s+l++++ e k++++ +e + + XP_020703327.1 136 STCSSASETSKGSVLSFSRcEGFGKEKEKDQEvAYQHQ 173 66777777777777777776555555555555332222 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MKAEGIHSSK RLGRDKNDEG VGDLRPWQNA SSRIIRVSRV SGGKDRHSKV WTVKGLRDRR 60 VRLSVSTAIQ FYDLQDRLGY DQPSKAVDWL IKAAADAIVD LPELVGPFPV PPSMELPARS 120 MQRGTAGEKH LSQSKSTCSS ASETSKGSVL SFSRCEGFGK EKEKDQEVAY QHQNLNKQSS 180 FTELLTVGGS STGIAAEVVD FSSGLNQKQM RPPLTNSTAD YFKQAGIFGQ TPKIPQFEPG 240 YSSLLHFGNN PHMGIGMMSY NTGEHQDMQQ FSLMQDHAIP VAALAPGGDY NLNVSISSGV 300 AGFSRGTLQS NSPHHHQLVH GANLPFFLSA TLPISASAGC SLENQFPGSF NGRLQLSCNE 360 AHRHPELKGE RKG

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MKAEGIHSSK RLGRDKNDEG VGDLRPWQNA SSRIIRVSRV SGGKDRHSKV WTVKGLRDRR  60
VRLSVSTAIQ FYDLQDRLGY DQPSKAVDWL IKAAADAIVD LPELVGPFPV PPSMELPARS  120
MQRGTAGEKH LSQSKSTCSS ASETSKGSVL SFSRCEGFGK EKEKDQEVAY QHQNLNKQSS  180
FTELLTVGGS STGIAAEVVD FSSGLNQKQM RPPLTNSTAD YFKQAGIFGQ TPKIPQFEPG  240
YSSLLHFGNN PHMGIGMMSY NTGEHQDMQQ FSLMQDHAIP VAALAPGGDY NLNVSISSGV  300
AGFSRGTLQS NSPHHHQLVH GANLPFFLSA TLPISASAGC SLENQFPGSF NGRLQLSCNE  360
AHRHPELKGE RKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.1	1e-37	TCP family protein