PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020703154.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 424aa MW: 47440.6 Da PI: 5.4933

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020703154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	102	5.3e-32	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y +++d+ +++++sw +n+fvv+++ fa+++LpkyFkh+nfaSFvRQLn+YgF+k++ ++ weF+++ F +g+k ll++ XP_020703154.1 27 FLSKTYAMVDDPLTDSIVSWGPWNNTFVVWEPLVFARDLLPKYFKHNNFASFVRQLNTYGFRKIDPDR---------WEFANEGFLRGHKPLLTY 112 9******************999*************************************999.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r+k++ XP_020703154.1 113 INRRKQS 119 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MDVSGNGGGG SVAGENPAIN VSGPPPFLSK TYAMVDDPLT DSIVSWGPWN NTFVVWEPLV 60 FARDLLPKYF KHNNFASFVR QLNTYGFRKI DPDRWEFANE GFLRGHKPLL TYINRRKQSL 120 PQNASFPSCV EVGKFGLDAY IERLKRDKNV LMQELAELRQ RQQATDALLQ ALTAHAQGME 180 QRQHQMMSFL SKAMHSPELL AQLVQRKRSN NDIPDSNKKQ RLPNQRDFER EISTSAGQRI 240 KHQHNLQTEA AKPVLMQIPT SDKSSISDSA QLGNFYLPID VLDTSRLSSI SSDGIPVVCS 300 SSAVSEIYSV APEQIPQAVT GFQDPSQMQG IMPDERIADI LRTSFLTFEA ESTLVIPSAG 360 IDEMIPVENG ISKLDEVYSF WYSADPLSGE TDVANLNIPE DNEIPKVPVK EWTGIRNWKT 420 SRAI

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MDVSGNGGGG SVAGENPAIN VSGPPPFLSK TYAMVDDPLT DSIVSWGPWN NTFVVWEPLV  60
FARDLLPKYF KHNNFASFVR QLNTYGFRKI DPDRWEFANE GFLRGHKPLL TYINRRKQSL  120
PQNASFPSCV EVGKFGLDAY IERLKRDKNV LMQELAELRQ RQQATDALLQ ALTAHAQGME  180
QRQHQMMSFL SKAMHSPELL AQLVQRKRSN NDIPDSNKKQ RLPNQRDFER EISTSAGQRI  240
KHQHNLQTEA AKPVLMQIPT SDKSSISDSA QLGNFYLPID VLDTSRLSSI SSDGIPVVCS  300
SSAVSEIYSV APEQIPQAVT GFQDPSQMQG IMPDERIADI LRTSFLTFEA ESTLVIPSAG  360
IDEMIPVENG ISKLDEVYSF WYSADPLSGE TDVANLNIPE DNEIPKVPVK EWTGIRNWKT  420
SRAI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	4e-82	HSF family protein