PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020703127.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 314aa    MW: 35140.6 Da    PI: 6.9373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020703127.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
   XP_020703127.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.74e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_020703127.1  67 RGNFTDQEEKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MGRPPCCEKE GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ  120
YSGEDGGRTI NQISNNHHQS VSKGQWERRL QTDIHMAKQA LSEALSLDTM NLESPSPPTF  180
VGPTNTCTYA SSTENISRLL ENWMKSTPKS RSRASLGSMS NVCSETTTME STTPAPMGKV  240
MMGSNHELGF RSVKIESLGR SVLQEESKES SAVAPPLSFI ENWLFDDLSV GNGGDDHQDL  300
VDLPLSDASE LFQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.21e-111MYB family protein