PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020702166.2
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 381aa    MW: 42301.9 Da    PI: 7.3588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020702166.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-14207254355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++h e+Er+RR+++N++f  Lr+++P+       +++Ka+ L  Av YIk+Lq
  XP_020702166.2 207 MNHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKELQ 254
                     5899***********************6.....4******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    
MEKQISPSSS SSPPSTLQYR LQCLLNSHPE CWAYAIFWRA SPEHHLLSFG DGHFRGTSSR  60
GGDTDDMEWF YALSLTRTFA TDETASPARA YASPAPVWLA GANALSNCGC DRSREAQIHG  120
IETLLYLSTP DGVLELGSSV LVAQNWSIVH QARAFLSGTA TLLKNGLWPS VKSEHSDSEE  180
EISRCRRAKK YGRKTRSSVA PDNNNPMNHV EAERQRREKL NHRFYALRSV VPNVSRMDKA  240
SLLADAVSYI KELQGKVEDL EREAKKVKKE VFLEKESYVG REMPSSTVTT KSISCGGVAT  300
IEVEVKLLGD DAMIRVQSEN LSHSPAKLMA EMRDLGLVVQ HATVVSFKEL MLQDVIVRVP  360
EALQGGDRLS LALHERLEKS S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.16e-61bHLH family protein