PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701607.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CO-like

Protein Properties

Length: 280aa MW: 31365.1 Da PI: 4.9344

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.4	5.9e-08	24	65	6	41
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ + + +C+ + +lC +C +++H+ H +vp XP_020701607.1 24 CDSCHSIPSSVYCRADAAYLCTNCDSSIHSAnslarrHHRVP 65 ****99*******************6688999977776 PP
2	CCT	68.3	2e-23	211	254	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrktRkF+K irY+sRKa+Ae+RpR+KGrF+k++ XP_020701607.1 211 REARVLRYREKRKTRKFQKIIRYASRKAYAETRPRIKGRFAKRT 254 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MPTEKVASAA TTRHPTPATW TSWCDSCHSI PSSVYCRADA AYLCTNCDSS IHSANSLARR 60 HHRVPLLPIP AGGLIVGGIS VALPKEEEDE EDPEEDQDGF LIGGEVDEYF DLVEFSTSCE 120 EEGKEKYDCR EEEEKQMLQS SFNVGEGFKG GIDYSAFLPH TESLSSIEGT VVPENSMISI 180 SSSQFRTSKE TIELFSGPPI QVPQQFSPMD REARVLRYRE KRKTRKFQKI IRYASRKAYA 240 ETRPRIKGRF AKRTDAELEV DQMFAAPVMV EAGYGVVHSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	6e-69	CO-like family protein