PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020701328.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 658aa MW: 71440.9 Da PI: 6.7458

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020701328.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.9	1.4e-16	424	470	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_020701328.1 424 VHNLSERRRRDRINEKMKALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 470 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MESNFQDLVS QIMPISEVHH TSKKGKSESA HSMKMPNYSS DLSSFMPELE LVELLWENGQ 60 IVMQGQSNRT KKSTVGTEFA FNGRVEDKFG QNGAIDSVAH DLPSTVPSSM NDQEDDAAPW 120 LNYAIDDSIQ NDYCSEFFSE LTSVHMTSLS DTNSNLYTSN KSTGCSQATK DSHIFRSSPG 180 ASDSSRSKFN NLLNMPHQCH NLSENAKPRV LEVGISSGHF GDLNSTKFQK EHVGVQKPFH 240 QSNSAGLMNF SHFSRPAALA KANLHSIDRL KSHDKSCTAA SNYPVESTVV ESRDGLKSLN 300 QPKVDSGSYG KTGVDDAEHV QSSTVVNRVS TSPNCQASSF AASMAAERTE ADKGTEAVVA 360 SSSVCSGYDA AAASNDLKHK SRKRAREVEE SGEESEDLEE ELFTVKKPSS GQAKSGKRSR 420 AAEVHNLSER RRRDRINEKM KALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQMMSMGN 480 GLFMHPMMLP AGMNFQHLRA PSISHFSPLG LGMGMGLGFG MGMIDLNGSP GLIPVPPLMH 540 GARFPCPLVP GLAGFHGMPP SSSIHSLGVP GQRPPLSVPH APLFNSQAGL FPQNPLKVSE 600 KDPSSSNNQQ QQCINSEAVE NARTKESKGE ASQAVCPLMQ KESKELHVNP VVNSNKTT

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MESNFQDLVS QIMPISEVHH TSKKGKSESA HSMKMPNYSS DLSSFMPELE LVELLWENGQ  60
IVMQGQSNRT KKSTVGTEFA FNGRVEDKFG QNGAIDSVAH DLPSTVPSSM NDQEDDAAPW  120
LNYAIDDSIQ NDYCSEFFSE LTSVHMTSLS DTNSNLYTSN KSTGCSQATK DSHIFRSSPG  180
ASDSSRSKFN NLLNMPHQCH NLSENAKPRV LEVGISSGHF GDLNSTKFQK EHVGVQKPFH  240
QSNSAGLMNF SHFSRPAALA KANLHSIDRL KSHDKSCTAA SNYPVESTVV ESRDGLKSLN  300
QPKVDSGSYG KTGVDDAEHV QSSTVVNRVS TSPNCQASSF AASMAAERTE ADKGTEAVVA  360
SSSVCSGYDA AAASNDLKHK SRKRAREVEE SGEESEDLEE ELFTVKKPSS GQAKSGKRSR  420
AAEVHNLSER RRRDRINEKM KALQELIPNC NKVDKASMLD EAIEYLKTLQ LQVQMMSMGN  480
GLFMHPMMLP AGMNFQHLRA PSISHFSPLG LGMGMGLGFG MGMIDLNGSP GLIPVPPLMH  540
GARFPCPLVP GLAGFHGMPP SSSIHSLGVP GQRPPLSVPH APLFNSQAGL FPQNPLKVSE  600
KDPSSSNNQQ QQCINSEAVE NARTKESKGE ASQAVCPLMQ KESKELHVNP VVNSNKTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	429	434	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-52	bHLH family protein