PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700592.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family Trihelix
Protein Properties Length: 319aa    MW: 37348.5 Da    PI: 7.1359
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.71.2e-2666151187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r +++ ++r++ +k+plW++v++ m +e g++rs  +C+ek++nl k+ykk+keg++++++   +++++f+qlea
  XP_020700592.1  66 RWPRQETLTLLEIRARLDPQFREAGQKAPLWDQVARIMaEEYGYQRSGRKCREKLDNLYKYYKKTKEGKIGKHE--GKHYRFFRQLEA 151
                     8*************************************7788****************************9754..456*******85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MESEDQYFHL LPELRQLMLL SSKPPIFPAA ASDHLYSLSP PLPSPPLPHP PFISAVNGGV  60
SSSQSRWPRQ ETLTLLEIRA RLDPQFREAG QKAPLWDQVA RIMAEEYGYQ RSGRKCREKL  120
DNLYKYYKKT KEGKIGKHEG KHYRFFRQLE ALYSPSTTTT AATIIKSSNP SIAKKLNLLE  180
NQNTLLFSTW SESSAEEEEE EEYSRTKNWI TELVEAQMKR LLEMQEAWFE KMMRSFERME  240
QERVRREESW RREEAERHEK ERRRLASERA CSEKREAALI MALEKIIQQR ESLGPAMMVR  300
GGEEREEMEC DLSRAMGVL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.14e-34Trihelix family protein