PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020700326.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 275aa    MW: 31020.3 Da    PI: 6.9984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020700326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH223e-07181221954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A  Y+k L
  XP_020700326.1 181 ARHRRERISERLRVLQRLVPGG-----RKMDTASMLDEAASYLKFL 221
                     599*****************96.....7****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MNEVLPNSLD LQELIWPHEM NANYKETDQD FFQQQEEIFA SDQLLPLPLI TSRSEDLQLL  60
RNILTFSSTC SNVSSVESDK HPYSFSDQRI DSNIKPVTRR CEDSCNPLKS KKAKLDCPKL  120
ESIDFQGEGR EEIDGEAIAQ VKEMIYRAAA LRPVSLGVEE IVEKPRRKNL KISSDPQTTA  180
ARHRRERISE RLRVLQRLVP GGRKMDTASM LDEAASYLKF LKAQVTALEK NSHGSSPGDM  240
KIVGLNCCSG VLPFPVTLSH YSSPKQKCIF PLPSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163169EKPRRKN
2164169KPRRKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-38bHLH family protein