PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699850.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 531aa MW: 56541.6 Da PI: 4.751

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699850.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.4e-11	347	389	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_020699850.1 347 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 389 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence
MLSRLSGAVW REGEGAEEEE DTASWTRAAT CGGGMGEGRD DMALPCLKSI LEDDWYVAAT 60 SGSGGNVGGS SVNQGFAGMN PPDSSLLLPP QVDSSCSPSS VFALDPSAHQ AFFPHKPALS 120 SFLSAVCSNP YDAGFDFVSD NPTFLPPVNP NAATSGFGGG MLGFPNVQIN SQDLLPMAGS 180 SSLLNPMAFD SFENSPFLSR GKVLRPLEIF PPVGAQPTLF QKRAAAALRQ NSSSMGGDKG 240 MCLGLLGMEA TGQLRSSWDG ELEKRRRIND DDELDDASID GSGLNYDSED ICEVAETVKV 300 DDEKNDGIGA ASGGGGGVGN VSITNSSLTG GGELKGRRKG LPAKNLMAER RRRKKLNDRL 360 YMLRSVVPKI SKMDRASILG DAIEYLKELL QRINDLHNEL ESTNSSMPTS STSSFHPLTP 420 TPPTLPCRIK EELCPSSLPS PNGQPARVEV RLREGRAVNI HMFCARRPGL LLSTMRALDG 480 LGLDIQQAVI SCFNGFALDV FRAEQSKDGP GVLPEEIKEV LLHSAGFQNA L

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence

MLSRLSGAVW REGEGAEEEE DTASWTRAAT CGGGMGEGRD DMALPCLKSI LEDDWYVAAT  60
SGSGGNVGGS SVNQGFAGMN PPDSSLLLPP QVDSSCSPSS VFALDPSAHQ AFFPHKPALS  120
SFLSAVCSNP YDAGFDFVSD NPTFLPPVNP NAATSGFGGG MLGFPNVQIN SQDLLPMAGS  180
SSLLNPMAFD SFENSPFLSR GKVLRPLEIF PPVGAQPTLF QKRAAAALRQ NSSSMGGDKG  240
MCLGLLGMEA TGQLRSSWDG ELEKRRRIND DDELDDASID GSGLNYDSED ICEVAETVKV  300
DDEKNDGIGA ASGGGGGVGN VSITNSSLTG GGELKGRRKG LPAKNLMAER RRRKKLNDRL  360
YMLRSVVPKI SKMDRASILG DAIEYLKELL QRINDLHNEL ESTNSSMPTS STSSFHPLTP  420
TPPTLPCRIK EELCPSSLPS PNGQPARVEV RLREGRAVNI HMFCARRPGL LLSTMRALDG  480
LGLDIQQAVI SCFNGFALDV FRAEQSKDGP GVLPEEIKEV LLHSAGFQNA L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	268	KRRRI
2	337	355	RRKGLPAKNLMAERRRRKK
3	349	356	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-110	bHLH family protein