PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020699818.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 325aa    MW: 35270.7 Da    PI: 4.8333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020699818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75e-14141187354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  XP_020699818.1 141 KSHSEAERRRRERINAHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 187
                     79*************************9.....8****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MENDVGDMHP SSSSQLDSVI RYSTFRMDQE SHDGSGDSLF PPILPWQDNR SFFPSSVLPP  60
LPPPAAFYGD FCSRRLTFAY DPIGLAASDP IGLAGLYMSG PSDALLLGGG GVSTAFGGLH  120
AELGKMTAQE IMDAKALAAS KSHSEAERRR RERINAHLAK LRSLLPSTTK TDKASLLAEV  180
IQHVKELKRQ TSEIAEESPL PTENDELTVD ATSDEEGRLI VTASLCCEDR TDLLPELIKA  240
LKALHLRTIK AEITTLGGRF KNVLVITADD YIDSTDQQQY SVESIQDALK AVMERTVAAD  300
EPAAGSSSKR QRTANLSSIL EPRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147152ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-73bHLH family protein