PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699225.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 268aa MW: 29804.8 Da PI: 7.2383

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	75	126	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+ +N+ + Lr+l+P++ ++ + a+i A+++Ik+L+ XP_020699225.1 75 QRMTHIVVERNRRRLMNEHLCALRSLMPSS---FVQRGDQASIIGGAIDFIKELE 126 79*************************9...9****************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MERLHRHINS FSQFLEECME SKELSGASSA LEAVFHGGNR EGKLSSFFPA VAERKKRKRV 60 AAKNGRAERV EAESQRMTHI VVERNRRRLM NEHLCALRSL MPSSFVQRGD QASIIGGAID 120 FIKELEQMLL SFQAEKVSRS SPSPAEDGWS PAAATVSSFF VSPQYTGYCF GLRRADEEGE 180 SEVDVEVTAV QGHVNLKVAG RRRPGQLVKA IAAIEELRLT VLHLSITSLD AVSVLYSLNL 240 KMEEDCRLGS ADEIASAVHQ IFSYINTY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	59	RKKRKR
2	76	87	RMTHIVVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01460.1	5e-58	bHLH family protein