PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699190.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 428aa MW: 47796.6 Da PI: 5.8269

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699190.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.3	4.5e-14	112	171	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+A +a++ a++k++g XP_020699190.2 112 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAGRAYDLAALKYWG 171 57*****************666664477446***********************98 PP
2	AP2	22.1	3.7e-07	214	247	1	37
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfg 37 s y+GV+++++ grW A+I + +k +lg+f XP_020699190.2 214 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFS 247 57**************988532...5*****95 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MDMEYSSQNW LAFSLSPHPG NLFEAFSFAP GAVEEDGGCL EPKLEDFLGG GGREEAEVNN 60 KGAIFDSDLK SVASGFPCGS VAEELPEQQI LEISAALSDT RKAVDTFGHR TSIYRGVTRH 120 RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAGR AYDLAALKYW GPTTTTNFPV 180 SDYEKELEDM KSMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 240 LYLGTFSKYY NNINIHMYSQ CTYSYRNYCI YFDMSRYNIS TIANSDLPIG SMATRAFKAF 300 DATSNSSSDT VMAVEEQQLA GRDDHNDYWS LVAFHNPYNQ DLQQQAAVSG STVGLYASGI 360 NMDFSDGVVM ESTDNGNNLV WRNSAINGVG FGGSFEGTNF AANSNSYYYY QTAKPNVSVF 420 QSPIFGIE

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MDMEYSSQNW LAFSLSPHPG NLFEAFSFAP GAVEEDGGCL EPKLEDFLGG GGREEAEVNN  60
KGAIFDSDLK SVASGFPCGS VAEELPEQQI LEISAALSDT RKAVDTFGHR TSIYRGVTRH  120
RWTGRYEAHL WDNSCRREGQ SRKGRQVYLG GYDKEEKAGR AYDLAALKYW GPTTTTNFPV  180
SDYEKELEDM KSMTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD  240
LYLGTFSKYY NNINIHMYSQ CTYSYRNYCI YFDMSRYNIS TIANSDLPIG SMATRAFKAF  300
DATSNSSSDT VMAVEEQQLA GRDDHNDYWS LVAFHNPYNQ DLQQQAAVSG STVGLYASGI  360
NMDFSDGVVM ESTDNGNNLV WRNSAINGVG FGGSFEGTNF AANSNSYYYY QTAKPNVSVF  420
QSPIFGIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-113	AP2 family protein