PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020699000.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 421aa MW: 47228.8 Da PI: 7.9619

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020699000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.6e-33	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerFve v+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl XP_020699000.1 44 KPRLKWTPELHERFVETVNQLGGADKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP
2	Myb_DNA-binding	64.1	2.7e-20	46	97	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT+e++e++v+ v+qlGg t+kt++r mg g+tl+++ks++qky+ XP_020699000.1 46 RLKWTPELHERFVETVNQLGGAdkaTPKTVMRLMGiPGLTLYHLKSHLQKYR 97 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MYHLNHSSNN LISSRESFSP ERNLYLQAGN GPGDSRLFLS TDAKPRLKWT PELHERFVET 60 VNQLGGADKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLCK NLQAQTSSRT AKNGSAAAPD 120 RTSEGSGSLV NNINVGHHNN NMFLTHRTLQ INEALQMQME VHKRLNEQME VQRHLQMRIE 180 AQGKYLQSVL EKAHTTLEIQ NLVSAGHEVA KVHPDELVSK VSNECFTSGF LGLGETNGME 240 ILQGHSAQLV DCSMDSCLTS CEGSQKDEDM YNKNIKLQCY HSNLSSRTKE KQEDVRFEQI 300 NSGWWRGELN GHKTFSQSNA SGNCTLPVSK GSSILSMSIA NQRETTERSK TSETKCRQID 360 KYKSDLEGPS YKRAAVQQEK SKNFNDLGMP CATAQLDLNA RDENNAAQNC KEFDLNGFNW 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MYHLNHSSNN LISSRESFSP ERNLYLQAGN GPGDSRLFLS TDAKPRLKWT PELHERFVET  60
VNQLGGADKA TPKTVMRLMG IPGLTLYHLK SHLQKYRLCK NLQAQTSSRT AKNGSAAAPD  120
RTSEGSGSLV NNINVGHHNN NMFLTHRTLQ INEALQMQME VHKRLNEQME VQRHLQMRIE  180
AQGKYLQSVL EKAHTTLEIQ NLVSAGHEVA KVHPDELVSK VSNECFTSGF LGLGETNGME  240
ILQGHSAQLV DCSMDSCLTS CEGSQKDEDM YNKNIKLQCY HSNLSSRTKE KQEDVRFEQI  300
NSGWWRGELN GHKTFSQSNA SGNCTLPVSK GSSILSMSIA NQRETTERSK TSETKCRQID  360
KYKSDLEGPS YKRAAVQQEK SKNFNDLGMP CATAQLDLNA RDENNAAQNC KEFDLNGFNW  420
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	7e-96	G2-like family protein