PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698721.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 1067aa MW: 118491 Da PI: 9.4416

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698721.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.8	1.3e-06	73	129	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++ +++ F+ + ++ ++e +e+++ +g+t +qV+ +F +R k +k XP_020698721.1 73 KKPRDLLNPKAVKYMQSIFAIKDTIGKKETREISALCGVTVTQVRDFFSGQRSKVRK 129 799***************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1067 aa Download sequence
MALVPVRTES SFLESEMDGS VESLGRLLDA QKKIFHSQID QLKRLVVNQC KLTGVNPLSQ 60 EMAAGALSIK IGKKPRDLLN PKAVKYMQSI FAIKDTIGKK ETREISALCG VTVTQVRDFF 120 SGQRSKVRKL VSLVREKAAK SDAANERCST NPEETLLYHI DAPSSAVDVK NVGDLAEVPD 180 SNGNLLAIQY YQNVPVSSID SKPIQVVVPS SSSQEESIPG IYEDDKKFLE NIFNLMRKEG 240 TFAGQVKLME WILQIHNSAV LVWFLTKGSI TILATWLSQA AIEEQTTLLN VILKVLCHLP 300 LHKALPAQMS SILQTVNKLR FYRTPDISNR AKVLLSRWSK MLVRNQAVKY PSILNSSNGV 360 QKDIIRKQRI SEILSEEFWR SKIGITDEIL ALKESSGNDS KSDPKQALKL LTASCNRSNR 420 KQGQSALSIK IKERRKVRLV EQIDQKAAGR IAQVVKASPS NLSRPISADD IQKAKMRAMF 480 MQHKYGKADA SSSEIKIIVE DSKGLPAPQS KKILPPPRIM QLEQINREEK MLADVLRGDS 540 EAPIDTISAG ALQEESLEKL KRSQFQWQTP PEMKINSSWR VGEAESSKEV DVQAQRIRRE 600 KETFYSSKFD IPPDPKEPWD IEMDFDDSLT PEIPIDQPPD SDAVEDPLDP SGDDQTIPDD 660 MPAAMVALPP MTAYGNAAEP DFELLAVLLK NPELVFALTS GQGKNLSSDE RVALLDMIKH 720 SSVSPGASLT GISSSTSQDK PKDPVPMSLP SPTPPSDVER AAGWRSAFPT VSKAQLPQSQ 780 FSCAVRHSAP TLTPTPLPTL MVLPAQAELQ SAIVRTSHVL ITANTVPQTV AFTSLTSQRP 840 CPLLSQHILP SSYAEPQRLN TECSLPSKRN ALSCPASAVP SPTPASFHQD TYCRNSLPTS 900 TVSSLPSLPP PQRRSQSLMI SDPSVAMIPP NPTSLSRGDA SAEWSEWRDM MPESSTRRQN 960 AKEFTLQGSP RFNASIRDIY HTHQGRSTGR VEIVGRSRDL ETWSPERPPL RSSESRHGHG 1020 RSHAESRREQ GWNQRHELSR QRSSEHHDQN RSSNGSRGRW RDRDRRR

Sequence ? help Back to Top

Protein Sequence Length: 1067 aa Download sequence

MALVPVRTES SFLESEMDGS VESLGRLLDA QKKIFHSQID QLKRLVVNQC KLTGVNPLSQ  60
EMAAGALSIK IGKKPRDLLN PKAVKYMQSI FAIKDTIGKK ETREISALCG VTVTQVRDFF  120
SGQRSKVRKL VSLVREKAAK SDAANERCST NPEETLLYHI DAPSSAVDVK NVGDLAEVPD  180
SNGNLLAIQY YQNVPVSSID SKPIQVVVPS SSSQEESIPG IYEDDKKFLE NIFNLMRKEG  240
TFAGQVKLME WILQIHNSAV LVWFLTKGSI TILATWLSQA AIEEQTTLLN VILKVLCHLP  300
LHKALPAQMS SILQTVNKLR FYRTPDISNR AKVLLSRWSK MLVRNQAVKY PSILNSSNGV  360
QKDIIRKQRI SEILSEEFWR SKIGITDEIL ALKESSGNDS KSDPKQALKL LTASCNRSNR  420
KQGQSALSIK IKERRKVRLV EQIDQKAAGR IAQVVKASPS NLSRPISADD IQKAKMRAMF  480
MQHKYGKADA SSSEIKIIVE DSKGLPAPQS KKILPPPRIM QLEQINREEK MLADVLRGDS  540
EAPIDTISAG ALQEESLEKL KRSQFQWQTP PEMKINSSWR VGEAESSKEV DVQAQRIRRE  600
KETFYSSKFD IPPDPKEPWD IEMDFDDSLT PEIPIDQPPD SDAVEDPLDP SGDDQTIPDD  660
MPAAMVALPP MTAYGNAAEP DFELLAVLLK NPELVFALTS GQGKNLSSDE RVALLDMIKH  720
SSVSPGASLT GISSSTSQDK PKDPVPMSLP SPTPPSDVER AAGWRSAFPT VSKAQLPQSQ  780
FSCAVRHSAP TLTPTPLPTL MVLPAQAELQ SAIVRTSHVL ITANTVPQTV AFTSLTSQRP  840
CPLLSQHILP SSYAEPQRLN TECSLPSKRN ALSCPASAVP SPTPASFHQD TYCRNSLPTS  900
TVSSLPSLPP PQRRSQSLMI SDPSVAMIPP NPTSLSRGDA SAEWSEWRDM MPESSTRRQN  960
AKEFTLQGSP RFNASIRDIY HTHQGRSTGR VEIVGRSRDL ETWSPERPPL RSSESRHGHG  1020
RSHAESRREQ GWNQRHELSR QRSSEHHDQN RSSNGSRGRW RDRDRRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1057	1067	RGRWRDRDRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-136	HB-other family protein