PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020698226.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 729aa MW: 81277 Da PI: 7.8681

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020698226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.1	8.2e-08	52	94	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I +++ + +q++++++ + XP_020698226.1 52 AWTRQEQENFFSALRQVGKN-FEKITCRVQ-SKNKNQVRHYYYRL 94 6***************99.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MMHPQPQMAL EIHLPSTESS LLNDGDYKFP SSTSVAISTQ KPGQKRTRQW AAWTRQEQEN 60 FFSALRQVGK NFEKITCRVQ SKNKNQVRHY YYRLVRRMNK LLSPGFCLDA KNSKDTNAAM 120 LRWWSLLEKY SCTPSKLHRK PRRFKIFIEA LESQLLKDRN KARRKRPCQG ENCLETSSAS 180 WRFSDHDFVG VKTAVADAQN TSKLGINRGP SLKRNTNSNV NFSKGGFSAT KATGQRHRTG 240 LVESAAYKRW EKAAMAGVSL VADAAEQLER VTNTGVCSHR IGETVLQTRE KLKLQLFPID 300 EDTRQILEKG AHNPFLELTL SARKRISSVL EHLNRKWGTN TIDTRELFLL PYNIQQDDIA 360 KCQRWTIKDA DSTAADVHAA IGNPSVFRLR YGWFSGVEPT AIFSISPLAP GPDDCTRLED 420 ISKRFVTSDT SKTSPPISCT SKLRGSCKGS PLPSATSVAE IRGQTDTLKL KDGCPESSGK 480 SSSFTVEKAE EGSRNQQEDM AYPAVRCSSD LLAGEWADSL TNISIGDLLL EASEVSSQQN 540 ALCIQQTSFS CDSFDAAVAA HSYFPQFTGL STQAPVVSIW NAEETCDEFS FKKAQPLREK 600 GLNLSATISQ AVSRDTTNMN VKESGRPNAN TGDEPESENH SSFCYKQEPA EDVSLTDFYW 660 PDSLGSLGQL DFDLPFSRYP AQDLSFSERS TGQSSFNRLI PSCLDAFQSG SLLGTDKKDF 720 DDDKMDIED

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MMHPQPQMAL EIHLPSTESS LLNDGDYKFP SSTSVAISTQ KPGQKRTRQW AAWTRQEQEN  60
FFSALRQVGK NFEKITCRVQ SKNKNQVRHY YYRLVRRMNK LLSPGFCLDA KNSKDTNAAM  120
LRWWSLLEKY SCTPSKLHRK PRRFKIFIEA LESQLLKDRN KARRKRPCQG ENCLETSSAS  180
WRFSDHDFVG VKTAVADAQN TSKLGINRGP SLKRNTNSNV NFSKGGFSAT KATGQRHRTG  240
LVESAAYKRW EKAAMAGVSL VADAAEQLER VTNTGVCSHR IGETVLQTRE KLKLQLFPID  300
EDTRQILEKG AHNPFLELTL SARKRISSVL EHLNRKWGTN TIDTRELFLL PYNIQQDDIA  360
KCQRWTIKDA DSTAADVHAA IGNPSVFRLR YGWFSGVEPT AIFSISPLAP GPDDCTRLED  420
ISKRFVTSDT SKTSPPISCT SKLRGSCKGS PLPSATSVAE IRGQTDTLKL KDGCPESSGK  480
SSSFTVEKAE EGSRNQQEDM AYPAVRCSSD LLAGEWADSL TNISIGDLLL EASEVSSQQN  540
ALCIQQTSFS CDSFDAAVAA HSYFPQFTGL STQAPVVSIW NAEETCDEFS FKKAQPLREK  600
GLNLSATISQ AVSRDTTNMN VKESGRPNAN TGDEPESENH SSFCYKQEPA EDVSLTDFYW  660
PDSLGSLGQL DFDLPFSRYP AQDLSFSERS TGQSSFNRLI PSCLDAFQSG SLLGTDKKDF  720
DDDKMDIED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	1e-164	MYB_related family protein