PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020697701.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 682aa MW: 77755.4 Da PI: 7.9545

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020697701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	46.9	3.8e-15	39	75	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+ Tp++Rrgp+g++tLCnaCGl +rkk l XP_020697701.1 39 CIHCGVGArsTPHMRRGPEGPRTLCNACGLAWRKKTL 75 8899865555************************976 PP
2	FAR1	87.5	2e-27	109	195	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrk k+ ++++ +rt+vCs+eg+r+e+k ++++r+r+etr+gC a++k+k++ +g++++tk+ eHnH+ XP_020697701.1 109 EFYNNYAGMAGFSVRKGWLDKRVSDKTTRSRTLVCSREGFRQERKAG-NEAKRPRPETRIGCLARMKIKLMPSGRYRITKFIAEHNHQ 195 6*****************************************999.9************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence
MHMPGESAAI GGSLLLQFED DNEQLEAGGD EGPEDLRRCI HCGVGARSTP HMRRGPEGPR 60 TLCNACGLAW RKKTLKKVTY LDASGEDAFG ADMVPKLGME FENENKAYEF YNNYAGMAGF 120 SVRKGWLDKR VSDKTTRSRT LVCSREGFRQ ERKAGNEAKR PRPETRIGCL ARMKIKLMPS 180 GRYRITKFIA EHNHQPAPPS SKHLLRSQRV TSEFQSTDAD LSDDAVAALR SSGEPTITRP 240 DVYILPSDYN ACLRSKRMKS MQSGDAEALL KYLQSMQLQN TAFFYAIQLD EDDKLTNIFW 300 ADSKSLEDFN YFGDVVCLDT TYKFNGHCRP FVLFLGVNHH KQITLFGAAF LYDETVESFK 360 WLLNTFGIAM HGKLPKTILT DESVAISSAL ATVWPETMHR LCVWQIYHSS MKHLSHVFQS 420 SKTFAKDFSR CIYSSEDEDQ LVLGWRSLLE KYDLRSNEWI SKLFECRENW ALAYGRQTFC 480 ADIKSTLQNE SLSSELKKYL TPQHDLPSFF KNYEKVVSEC RYAELQADFH ASQSFPRIPP 540 SKMLRQAASM YTPAVFEMFR KEFDVFMDCM LYNSGEYGRV TEYRITVGDN AKEYYVRLDS 600 TDFSVACSCK KFEFTGIHCG HVIKVLDVRN IKELPFRYYL KRWKRDAKLA IDAEPKSPTV 660 SLASGQVPPD PHQGCQLGQA TG

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence

MHMPGESAAI GGSLLLQFED DNEQLEAGGD EGPEDLRRCI HCGVGARSTP HMRRGPEGPR  60
TLCNACGLAW RKKTLKKVTY LDASGEDAFG ADMVPKLGME FENENKAYEF YNNYAGMAGF  120
SVRKGWLDKR VSDKTTRSRT LVCSREGFRQ ERKAGNEAKR PRPETRIGCL ARMKIKLMPS  180
GRYRITKFIA EHNHQPAPPS SKHLLRSQRV TSEFQSTDAD LSDDAVAALR SSGEPTITRP  240
DVYILPSDYN ACLRSKRMKS MQSGDAEALL KYLQSMQLQN TAFFYAIQLD EDDKLTNIFW  300
ADSKSLEDFN YFGDVVCLDT TYKFNGHCRP FVLFLGVNHH KQITLFGAAF LYDETVESFK  360
WLLNTFGIAM HGKLPKTILT DESVAISSAL ATVWPETMHR LCVWQIYHSS MKHLSHVFQS  420
SKTFAKDFSR CIYSSEDEDQ LVLGWRSLLE KYDLRSNEWI SKLFECRENW ALAYGRQTFC  480
ADIKSTLQNE SLSSELKKYL TPQHDLPSFF KNYEKVVSEC RYAELQADFH ASQSFPRIPP  540
SKMLRQAASM YTPAVFEMFR KEFDVFMDCM LYNSGEYGRV TEYRITVGDN AKEYYVRLDS  600
TDFSVACSCK KFEFTGIHCG HVIKVLDVRN IKELPFRYYL KRWKRDAKLA IDAEPKSPTV  660
SLASGQVPPD PHQGCQLGQA TG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	163	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-121	FAR1 family protein