PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020696431.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 263aa MW: 31685.3 Da PI: 6.7086

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020696431.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73.1	4.8e-23	30	112	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ e+++ + +r e+++ + ++k++k lWee+s++m ++gf r+p+qCk+kw+nl +r+k ++++ +r s++t+py+++++ XP_020696431.1 30 QWSPAETREFLSVRAELDQCFAETKRNKRLWEEISSRMLSKGFYRTPEQCKSKWKNLLTRFKGSEAMDDER---SRQTFPYYEEMK 112 7******************************************************************97...56689***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MEYHLHHQEQ DLAGVDVAAS SGGGGERLPQ WSPAETREFL SVRAELDQCF AETKRNKRLW 60 EEISSRMLSK GFYRTPEQCK SKWKNLLTRF KGSEAMDDER SRQTFPYYEE MKNIFSRRVQ 120 RLHSLEKEKG VLDPEEVEEK QEEEDDDDGR MKKKRKRKSG RNEGEERGRI LEEVSWALKE 180 LARRQREREE RWLQAAERRD AERREAQFEL RRVMEGIHEE RAAMEKRWRE REEERWARQE 240 VRAERRDRII ATIFARLDGD NGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	KKKRKRK
2	153	158	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	3e-39	Trihelix family protein