PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695944.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CAMTA

Protein Properties

Length: 853aa MW: 95971.3 Da PI: 7.2078

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	51.5	2e-16	34	77	74	117
CG-1 74 KvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 K+g+ e +++yYa++e++p+f rrcywlL+++le+ivlvhy+++ XP_020695944.1 34 KIGNEERIHVYYARGEDDPNFYRRCYWLLDKKLEHIVLVHYRQT 77 99***************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence
MKGTTSSWGC PLSSPMPCHL PITYELSVPA ISPKIGNEER IHVYYARGED DPNFYRRCYW 60 LLDKKLEHIV LVHYRQTLEN VPALVEYKEP FYLAGMMSDS SPLTPVNSIS GSMQSDSSGS 120 AAMSEEINSR EDQAIFTGSG IFLSKKETGL HIKELSLHDI NNLGWAELAL ASEYIEPCMG 180 KADGALDSSD SVQFKAISSI HDQGGTEYLE TPDDQGLPSV LLNTSNLKMM SQIVSDGPKM 240 FDDDIFNNKN GFEQWDSLKK DSFGTLEAPL ISNGNGSNLF RAMDQSSVLQ QIFTINEVSP 300 EWGYSTVETK VVVIGNFAAS HKHLESSSIY CVFGELCVGM QMVQSGVYRC IALPQMPGKV 360 DAFLSLDGQT PISQVITFHY RHVPAVQLND GVTSKDANGE EKFRDVMAQK RLAHLLFSTS 420 DSMPLFSSKM LPKAIKEAQR VAQITSPYIE NDWKELLKLD CKNEITFYQA CEDLLELVFK 480 NKLQEWLMKK IAEGCKITTR DSQGQGVIHL CTILDYTWAV SLYSLSGFSL DFRDAYGWTA 540 LHWAAHLGRE KMVATLIYAG ANPSLVTDPT PENPGGLTAA DLASKGGHDG LAAYLAEKGL 600 TAHFEAMSLS GNVPSSVLRV SKDQVNLEDL HYEMLSEQEV CLKESLEAYR NAADAADRIQ 660 AAFRERTLKL QTESVQLANP QMEASQIVAA LRIQHAYRNY NRRRLMKAAA RIQSHFRTWR 720 IRKDFLNMRR QVIKIQAAVR GHQVRKQYRK IVWSVGVLEK AVLRWRLKRK GLRGMQVKAM 780 EVGRANNLEE STSTEEDFFK ISRKHAEERV QRSVVRVQSM FRSYQAQQQY RRLKLAQEQA 840 KLEFSLNGDS KFL

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence

MKGTTSSWGC PLSSPMPCHL PITYELSVPA ISPKIGNEER IHVYYARGED DPNFYRRCYW  60
LLDKKLEHIV LVHYRQTLEN VPALVEYKEP FYLAGMMSDS SPLTPVNSIS GSMQSDSSGS  120
AAMSEEINSR EDQAIFTGSG IFLSKKETGL HIKELSLHDI NNLGWAELAL ASEYIEPCMG  180
KADGALDSSD SVQFKAISSI HDQGGTEYLE TPDDQGLPSV LLNTSNLKMM SQIVSDGPKM  240
FDDDIFNNKN GFEQWDSLKK DSFGTLEAPL ISNGNGSNLF RAMDQSSVLQ QIFTINEVSP  300
EWGYSTVETK VVVIGNFAAS HKHLESSSIY CVFGELCVGM QMVQSGVYRC IALPQMPGKV  360
DAFLSLDGQT PISQVITFHY RHVPAVQLND GVTSKDANGE EKFRDVMAQK RLAHLLFSTS  420
DSMPLFSSKM LPKAIKEAQR VAQITSPYIE NDWKELLKLD CKNEITFYQA CEDLLELVFK  480
NKLQEWLMKK IAEGCKITTR DSQGQGVIHL CTILDYTWAV SLYSLSGFSL DFRDAYGWTA  540
LHWAAHLGRE KMVATLIYAG ANPSLVTDPT PENPGGLTAA DLASKGGHDG LAAYLAEKGL  600
TAHFEAMSLS GNVPSSVLRV SKDQVNLEDL HYEMLSEQEV CLKESLEAYR NAADAADRIQ  660
AAFRERTLKL QTESVQLANP QMEASQIVAA LRIQHAYRNY NRRRLMKAAA RIQSHFRTWR  720
IRKDFLNMRR QVIKIQAAVR GHQVRKQYRK IVWSVGVLEK AVLRWRLKRK GLRGMQVKAM  780
EVGRANNLEE STSTEEDFFK ISRKHAEERV QRSVVRVQSM FRSYQAQQQY RRLKLAQEQA  840
KLEFSLNGDS KFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	CAMTA family protein