PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695415.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 641aa MW: 71454.6 Da PI: 9.6282

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	543	592	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_020695415.1 543 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdsvKHRTYVDLKDKWKTL 592 678999******************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MVFQKKLDVG FIGCQIPTMP RFPRSARGKR SPPKKVENNQ MHPFDLLATV AGELLEKRES 60 SCSLYETAER TKNHVNTIKQ KHLDNGSPSK SDVFDQGSCD EGSFVARFVS HEERRAASAL 120 ALVKSDVSEK DGFARKSAQS IGTLKCELQK LKATVSLKND RIGIHNLEDP MILDSKAIAL 180 VSSDSSVELT PSVDYHSAYS SSFQSVKDGA ELVVDKDDDE NSSGRTHNCA LYSKAFKPHC 240 TVERRVRKMT TSNYWKADRE AMINDGERWN REIKPALHSR KLSYTRQRTQ RCSFKRKKLL 300 ERFSSSASNG GFCSQDVPDS LVKCDTKFDS SDPQAHLNDA QGRSCSTTDQ RLSYESADHP 360 VKLSIKSFRV PELFIEIPAN ATVGSLKRTV MEAVTAVLSG GLRVGVLLQG KKIRDDNKTL 420 VQAGISNTDK LDNLGFTLEP NPNRAPPPHK SNSREPESPN KILSHADQAT PDTITQPPPP 480 NTTANCTDSD HDSVHSHANP SSSVDQMYDN SKALVPILAV KSDALSVIPL RNSRRSEMVR 540 RIRRPFSVSE VEALVQAVEK LGTGRWRDVK LRAFDSVKHR TYVDLKDKWK TLVHTARISP 600 QQRRGEPVPQ DLLDRVLSAH AYWCQQQAKS TRLAEPYLLP A

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MVFQKKLDVG FIGCQIPTMP RFPRSARGKR SPPKKVENNQ MHPFDLLATV AGELLEKRES  60
SCSLYETAER TKNHVNTIKQ KHLDNGSPSK SDVFDQGSCD EGSFVARFVS HEERRAASAL  120
ALVKSDVSEK DGFARKSAQS IGTLKCELQK LKATVSLKND RIGIHNLEDP MILDSKAIAL  180
VSSDSSVELT PSVDYHSAYS SSFQSVKDGA ELVVDKDDDE NSSGRTHNCA LYSKAFKPHC  240
TVERRVRKMT TSNYWKADRE AMINDGERWN REIKPALHSR KLSYTRQRTQ RCSFKRKKLL  300
ERFSSSASNG GFCSQDVPDS LVKCDTKFDS SDPQAHLNDA QGRSCSTTDQ RLSYESADHP  360
VKLSIKSFRV PELFIEIPAN ATVGSLKRTV MEAVTAVLSG GLRVGVLLQG KKIRDDNKTL  420
VQAGISNTDK LDNLGFTLEP NPNRAPPPHK SNSREPESPN KILSHADQAT PDTITQPPPP  480
NTTANCTDSD HDSVHSHANP SSSVDQMYDN SKALVPILAV KSDALSVIPL RNSRRSEMVR  540
RIRRPFSVSE VEALVQAVEK LGTGRWRDVK LRAFDSVKHR TYVDLKDKWK TLVHTARISP  600
QQRRGEPVPQ DLLDRVLSAH AYWCQQQAKS TRLAEPYLLP A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	3e-93	MYB_related family protein