PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020695141.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 478aa MW: 53625.4 Da PI: 6.5833

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020695141.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	244	265	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H XP_020695141.1 244 FCRICGKGFKRDANLRMHMRGH 265 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MLYPFKAHTR GMNFSSESAE MEQKSRPFEI SASSCSADNS SIHLNANELF NQMRSKGFNF 60 NFDAQGSQCG TCPINQIVKD TNVNLDVKSM LNNLSFLEQK IHNIQDIIHS IVSQKSTTSS 120 LPNEFSVRQQ LVTTDLASII VDLISTAGNL LPTIKNNLLS SNPPPNQFCS SFDSLTNMEA 180 DAPLPKHELM KIQDDRSEMN ENVHIEDHDM KESEDGAEVD NLLLGSYEVL QLEKEEILAP 240 HTHFCRICGK GFKRDANLRM HMRGHGDEYK TPAALAKPSY SSEPALIKRY SCPFVGCKRN 300 KEHKGFQPLK TLLCVKNHYK RTHCDKSFIC SKCNLKKFSV LADLKTHEKH CGRDKWLCSC 360 GTTFSRKDKL FGHIALFQGH SPALPTDHVN DNGVGVRIDG NGYDSSTNSS NDDKDTKLFD 420 DGHDYLSTLR FEPYEYGISD EFMKATFGLT EYSSIMYPSG LSDFGLKKED TSGSICML

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MLYPFKAHTR GMNFSSESAE MEQKSRPFEI SASSCSADNS SIHLNANELF NQMRSKGFNF  60
NFDAQGSQCG TCPINQIVKD TNVNLDVKSM LNNLSFLEQK IHNIQDIIHS IVSQKSTTSS  120
LPNEFSVRQQ LVTTDLASII VDLISTAGNL LPTIKNNLLS SNPPPNQFCS SFDSLTNMEA  180
DAPLPKHELM KIQDDRSEMN ENVHIEDHDM KESEDGAEVD NLLLGSYEVL QLEKEEILAP  240
HTHFCRICGK GFKRDANLRM HMRGHGDEYK TPAALAKPSY SSEPALIKRY SCPFVGCKRN  300
KEHKGFQPLK TLLCVKNHYK RTHCDKSFIC SKCNLKKFSV LADLKTHEKH CGRDKWLCSC  360
GTTFSRKDKL FGHIALFQGH SPALPTDHVN DNGVGVRIDG NGYDSSTNSS NDDKDTKLFD  420
DGHDYLSTLR FEPYEYGISD EFMKATFGLT EYSSIMYPSG LSDFGLKKED TSGSICML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-132	C2H2 family protein