PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_020695019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
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Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 14950.4 Da PI: 7.9177 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.9 | 7.9e-14 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C++V XP_020695019.1 27 CSGCRNLLLYPLGATSVCCAVCNAV 51 ************************9 PP | |||||||
2 | zf-LSD1 | 46.8 | 4.7e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_020695019.1 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP | |||||||
3 | zf-LSD1 | 41.9 | 1.6e-13 | 104 | 128 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_020695019.1 104 CGNCRMLLMYQYGARSVKCAVCNFV 128 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence |
MPVPLAPYPS PPVPFTPPNG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTNVPPPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALDANQVA HVNCGNCRML LMYQYGARSV 120 KCAVCNFVTS VGALQSNEQK PSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 7e-64 | LSD family protein |