PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694559.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CPP

Protein Properties

Length: 577aa MW: 63296.8 Da PI: 7.0487

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694559.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	46.2	9.2e-15	127	166	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +kk+CnCk+s+Clk+YCeCfa+g++C+ C+C +C+N+ e+ XP_020694559.1 127 RKKNCNCKHSRCLKLYCECFASGVYCDG-CNCANCFNNVEN 166 689***********************.******9875 PP
2	TCR	51	2.9e-16	211	250	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cs++CkC dCkN e XP_020694559.1 211 KHNKGCHCKKSGCLKKYCECFQANILCSDNCKCMDCKNFE 250 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 577 aa Download sequence
MVVHRGTEAF GHFHQFTLYY LSVGSLMEQG TKSSSLGPSN FPPRKLVRQL DFTPGNCVAP 60 TLSSPVVPVP FEQSPLPSTL QQQQNQKQML APALSISRPS IPMSIKPESP QTRSKPLFEM 120 KEGTPTRKKN CNCKHSRCLK LYCECFASGV YCDGCNCANC FNNVENEAAR HEAVEATLER 180 NPNAFRPKIG NSPQTIRDVR EDTGEIALAG KHNKGCHCKK SGCLKKYCEC FQANILCSDN 240 CKCMDCKNFE GSEDRKALFH GDGNAMNCMQ QAANASLNRA IGPSIYASPT SKKRKSQDIF 300 FGLSSQEQSI HRLAHCPESL GPTFASISKG RATNLTSTSV GSLKITYRPL LADIVHAEDV 360 KELCRILVIV SGEVAKTTDK RVDEEMMSEM EEQTESSLAS SSHDKDETQK DVDLQKMSAD 420 DRLSGTHADK MSTEESGSDL VDVQKVGRPI SPGTLALMCD EQDMLFMSSS QDPNPPSSRL 480 PYNQSLTEVY AEQEKCVLMA YRESLLKLIN CGAAKEAKLS SMSLKAEKCS DEEPANNSMG 540 GRVASSAAFP AFSNSNVVPS RLENGLLLKP KIENFEM

Sequence ? help Back to Top

Protein Sequence Length: 577 aa Download sequence

MVVHRGTEAF GHFHQFTLYY LSVGSLMEQG TKSSSLGPSN FPPRKLVRQL DFTPGNCVAP  60
TLSSPVVPVP FEQSPLPSTL QQQQNQKQML APALSISRPS IPMSIKPESP QTRSKPLFEM  120
KEGTPTRKKN CNCKHSRCLK LYCECFASGV YCDGCNCANC FNNVENEAAR HEAVEATLER  180
NPNAFRPKIG NSPQTIRDVR EDTGEIALAG KHNKGCHCKK SGCLKKYCEC FQANILCSDN  240
CKCMDCKNFE GSEDRKALFH GDGNAMNCMQ QAANASLNRA IGPSIYASPT SKKRKSQDIF  300
FGLSSQEQSI HRLAHCPESL GPTFASISKG RATNLTSTSV GSLKITYRPL LADIVHAEDV  360
KELCRILVIV SGEVAKTTDK RVDEEMMSEM EEQTESSLAS SSHDKDETQK DVDLQKMSAD  420
DRLSGTHADK MSTEESGSDL VDVQKVGRPI SPGTLALMCD EQDMLFMSSS QDPNPPSSRL  480
PYNQSLTEVY AEQEKCVLMA YRESLLKLIN CGAAKEAKLS SMSLKAEKCS DEEPANNSMG  540
GRVASSAAFP AFSNSNVVPS RLENGLLLKP KIENFEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-143	CPP family protein