PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020694089.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 513aa MW: 56625.8 Da PI: 6.8951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020694089.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	53.4	4.6e-17	199	248	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr llP++ ++K +Ka+ L +++eYI+ Lq XP_020694089.1 199 RSKHSATEQRRRSKINDRFQILRGLLPNS----DQKRDKASFLLEVIEYIQFLQ 248 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MLMELPGKKK TRDLLSLYTK ESSFQLQDSR PHAQGFLMKT HDFLQPLETA DDEKTHKGPT 60 QRTTHVLPGG IGTYSISHVS SGASSFAVVK PESNTCGPDA AYAFPVWDAA KEPRPTTGQW 120 PSTFAALSPP SFGSLASSRN SEFPDKKQRF MESASRFSKG FEEDDDDDEE FGKRESSSHK 180 DLTVKIDGKT GEQKACTPRS KHSATEQRRR SKINDRFQIL RGLLPNSDQK RDKASFLLEV 240 IEYIQFLQER LQKYESMYPG WSDETAKLMP WVKVYFRSFW KNSRNNHHGS GDGMIDPQVL 300 KNGASSGLLM SDSSIPVAPS ILSSSQNPTE SDLIAGVSYK ELENPNGFSN KVAASPASLQ 360 PNLYPSIGRG TGDVSHPQQR LIPETVFTGS QSEWLRSSFP TGCNVSNDEI NAQELTIDEG 420 TISVSSEYSQ GLLNTLSQAL QNSGIDLSQA SISVHINLGR RASVSRRNAS SMAAPKEQDE 480 PLSSNLVMNS TRSGNRSDES EQATKKHKLD HHN

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MLMELPGKKK TRDLLSLYTK ESSFQLQDSR PHAQGFLMKT HDFLQPLETA DDEKTHKGPT  60
QRTTHVLPGG IGTYSISHVS SGASSFAVVK PESNTCGPDA AYAFPVWDAA KEPRPTTGQW  120
PSTFAALSPP SFGSLASSRN SEFPDKKQRF MESASRFSKG FEEDDDDDEE FGKRESSSHK  180
DLTVKIDGKT GEQKACTPRS KHSATEQRRR SKINDRFQIL RGLLPNSDQK RDKASFLLEV  240
IEYIQFLQER LQKYESMYPG WSDETAKLMP WVKVYFRSFW KNSRNNHHGS GDGMIDPQVL  300
KNGASSGLLM SDSSIPVAPS ILSSSQNPTE SDLIAGVSYK ELENPNGFSN KVAASPASLQ  360
PNLYPSIGRG TGDVSHPQQR LIPETVFTGS QSEWLRSSFP TGCNVSNDEI NAQELTIDEG  420
TISVSSEYSQ GLLNTLSQAL QNSGIDLSQA SISVHINLGR RASVSRRNAS SMAAPKEQDE  480
PLSSNLVMNS TRSGNRSDES EQATKKHKLD HHN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.6	8e-57	bHLH family protein