PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693894.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 466aa MW: 51759 Da PI: 7.8474

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.9	2.1e-17	159	208	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+++lg f+ta +Aa+a+++a+ k++g XP_020693894.1 159 SLYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHDAARAYDRAAIKFRG 208 57*****************......55**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MILDLNGTLG ANWSFAQKKI LQEGSCGGQM VDSGSSNSSV LNGEEYSNIS EDDMSSSHPA 60 FRFGILKDAV ELEEEVDEIR VISDSDIVTH QLFPQHPQGF SEWHSGRTVT ASSLSRQPLE 120 DLIIFQSNVP AAGEVKLIQP QQQQLQVKKS RRGPRSRSSL YRGVTFYRRT GRWESHIWDC 180 GKQVYLGGFD TAHDAARAYD RAAIKFRGLD ADINFSLSDY EEDLKQMRNL TKEEFVQILR 240 RRSTGFSRGS SKYRGVTLNK CGRWEARMGQ LLGKKAYDKA AIKCKGKEAV TNFQQSSYNY 300 LLPKDDGEDL GHGIDLNLSI SQPSVCSQNR NVNLVGQQLY YGPFEASDQI KEMPIPFVQA 360 NLLAMAPDHP QVWSNIYPGF FPVNEERAMN KKAEAGLTAL TSWPAWKIHG VSPLPPHPCA 420 ASSGFSTTST NVSNSSAQPS QLPSATTPHL LQSCTRPPAT SHRFFG

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MILDLNGTLG ANWSFAQKKI LQEGSCGGQM VDSGSSNSSV LNGEEYSNIS EDDMSSSHPA  60
FRFGILKDAV ELEEEVDEIR VISDSDIVTH QLFPQHPQGF SEWHSGRTVT ASSLSRQPLE  120
DLIIFQSNVP AAGEVKLIQP QQQQLQVKKS RRGPRSRSSL YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHDAARAYD RAAIKFRGLD ADINFSLSDY EEDLKQMRNL TKEEFVQILR  240
RRSTGFSRGS SKYRGVTLNK CGRWEARMGQ LLGKKAYDKA AIKCKGKEAV TNFQQSSYNY  300
LLPKDDGEDL GHGIDLNLSI SQPSVCSQNR NVNLVGQQLY YGPFEASDQI KEMPIPFVQA  360
NLLAMAPDHP QVWSNIYPGF FPVNEERAMN KKAEAGLTAL TSWPAWKIHG VSPLPPHPCA  420
ASSGFSTTST NVSNSSAQPS QLPSATTPHL LQSCTRPPAT SHRFFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	8e-74	AP2 family protein