PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020693565.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 468aa MW: 51170.6 Da PI: 8.865

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020693565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	80	102	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_020693565.1 80 FICEICNKGFQRDQNLQLHRRGH 102 89*******************88 PP
2	zf-C2H2	11.3	0.001	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_020693565.1 156 WKCDKCSKKYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MMKGLIIPSQ HQLLDENMSN LTSASGEASV SSNQQSSFAS PNPNPNQQPA KKKRNLPGNP 60 DPEAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEMRKKV 120 YICPEVTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT 180 REYRCDCGTL FSRRDSFITH RAFCDALAEE SARTMTGTAL AATQHPLLFS ANQPLEAAMQ 240 FPHLIRAGAE GGGQGLQELT LKKETQQPAF PAWLGATASL NQLDIPSTIY TSRMEQEYSQ 300 ENHQANGLAH HLIQGPAAPA HMSATALLQK AAQMGATMSR PTPVNSQMAG HNNGNIVNPH 360 ASGGSGVFGL GLSSSNHNEY IGVNGSTAGA SPFLHDLMIN SLPQAGSGFE LGSFEEHYVG 420 GGNDGMTRDF LGLRAFSHKD LFNLAGFETC MSNSSSYEHQ NKKPWHGN

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MMKGLIIPSQ HQLLDENMSN LTSASGEASV SSNQQSSFAS PNPNPNQQPA KKKRNLPGNP  60
DPEAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTSKEMRKKV  120
YICPEVTCVH HDPSRALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT  180
REYRCDCGTL FSRRDSFITH RAFCDALAEE SARTMTGTAL AATQHPLLFS ANQPLEAAMQ  240
FPHLIRAGAE GGGQGLQELT LKKETQQPAF PAWLGATASL NQLDIPSTIY TSRMEQEYSQ  300
ENHQANGLAH HLIQGPAAPA HMSATALLQK AAQMGATMSR PTPVNSQMAG HNNGNIVNPH  360
ASGGSGVFGL GLSSSNHNEY IGVNGSTAGA SPFLHDLMIN SLPQAGSGFE LGSFEEHYVG  420
GGNDGMTRDF LGLRAFSHKD LFNLAGFETC MSNSSSYEHQ NKKPWHGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	119	KLKQRTSKEMRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-105	C2H2 family protein