PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020693032.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 288aa    MW: 33704.8 Da    PI: 6.1758
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020693032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.78.1e-2353140290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Y++YA++vGFsvrk+++ +  ++++i +++fvCsk  +++  + +  k++ ++a+trtgC a+++ + +++g+w+v+k++++HnHela
  XP_020693032.1  53 IYCRYAHSVGFSVRKDHHCYWPNSRKIRMKDFVCSKADFKKGLDLN-AKSKYRKANTRTGCPAMIRFSVDQEGEWKVNKCVENHNHELA 140
                     7*****************************************9999.8999999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MDSVPEEMND WSKMEGFTQE SELRGGDGLQ QNTQPNFDIL SVVCNSEKEA YDIYCRYAHS  60
VGFSVRKDHH CYWPNSRKIR MKDFVCSKAD FKKGLDLNAK SKYRKANTRT GCPAMIRFSV  120
DQEGEWKVNK CVENHNHELA RPEDQHLLRS CRNITEERAF VLKSMTDAGI RTIDAFTYLA  180
DEVGGREYVG FLRRDAYNFV QRNRRCKIET GDTNSLIEIF KNRANNDNMF VWEVQYDEED  240
RLMNFFWADV VGRIDYDCFG DAIIFDTSYR LNKYNLACAP FVGVNNHW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-39FAR1 family protein