PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692391.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB_related

Protein Properties

Length: 454aa MW: 49813.5 Da PI: 5.9336

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.3e-16	51	95	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E++++++av+++G W+ I +++g ++t+ q++s+ qk+ XP_020692391.1 51 RERWTEDEHKKFLEAVQLHGRA-WRCIEEHIG-TKTAVQIRSHAQKF 95 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MAEAVGVLQG QSDCTNSNSL NGILTKDQDS YGDKVEMTPK VRKPYTITKQ RERWTEDEHK 60 KFLEAVQLHG RAWRCIEEHI GTKTAVQIRS HAQKFVSKMA REANDNGTGK MKPIEIPPPR 120 PKKKPTRPYP RKQVLSSTKE ITILGKLERC SSSVFSVSEQ DGSPTSVLSV VGSESIDALL 180 SNNPNGCASP GGSALGSNNH ESGIPSSKNS VEGDDKHLSL GLTPAGLTTE DEPTMEFDMN 240 CSMERIHSKE ASSEEQTGPT LKLFGRTLIV ANSCKQFSTE AADADHRASQ GMIAESNCNA 300 GMELDSGKLA EEVINGGFST NGTWPGGYLP PYYCWPPLYG NAANSTGEAR VFPLPWLPFY 360 PNIPFTYAYS QQQTRSREDL NQSNLQNECS GTGSNTDYEG ANAVESKPDE CRDKKEVEFF 420 IVQNESKTDN GRAVKCSKGF VPYRRCDLEV CVRI

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MAEAVGVLQG QSDCTNSNSL NGILTKDQDS YGDKVEMTPK VRKPYTITKQ RERWTEDEHK  60
KFLEAVQLHG RAWRCIEEHI GTKTAVQIRS HAQKFVSKMA REANDNGTGK MKPIEIPPPR  120
PKKKPTRPYP RKQVLSSTKE ITILGKLERC SSSVFSVSEQ DGSPTSVLSV VGSESIDALL  180
SNNPNGCASP GGSALGSNNH ESGIPSSKNS VEGDDKHLSL GLTPAGLTTE DEPTMEFDMN  240
CSMERIHSKE ASSEEQTGPT LKLFGRTLIV ANSCKQFSTE AADADHRASQ GMIAESNCNA  300
GMELDSGKLA EEVINGGFST NGTWPGGYLP PYYCWPPLYG NAANSTGEAR VFPLPWLPFY  360
PNIPFTYAYS QQQTRSREDL NQSNLQNECS GTGSNTDYEG ANAVESKPDE CRDKKEVEFF  420
IVQNESKTDN GRAVKCSKGF VPYRRCDLEV CVRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	1e-41	MYB_related family protein