PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692277.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 716aa MW: 81831.2 Da PI: 6.8625

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.7	1.3e-25	89	176	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrnge.itkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+++GF r+ +s++sk ++e ++++fvCskeg +++ +++ +++r+r++ r gCka+++v ++ +++w+v+kle+ HnH+l XP_020692277.1 89 FYNEYARRLGFPFRVGRSRRSKGTEEvLIMKRFVCSKEGIYQKKPSSEGTRKRERMSMREGCKAMMEVIRD-NERWVVSKLEKAHNHHL 176 *******************876651689***********9999***************999.9************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MEVARTEGDE LIADYVNCLM SLDANSRPVE NINPSSLSVS AAAQIQTNIP SVLHEQSVPK 60 VFVQAGVEET DLEPVLGMEF ESDEAAKTFY NEYARRLGFP FRVGRSRRSK GTEEVLIMKR 120 FVCSKEGIYQ KKPSSEGTRK RERMSMREGC KAMMEVIRDN ERWVVSKLEK AHNHHLGTCT 180 RVGYLRSRGF INASDKANFI ASDTMMLLRQ NAFGQGGDAQ GLLDYFKRMQ AENPAFFYAI 240 QVDNNSCVSN AFWADAKART SYNYFGDTVT FDTTYKKNKY MMPFITFSGV NHHLQPVIFG 300 YALLIDENEY SFIWLFETWL EAMGGRRPVS FVTDQNRAMA AATAKVFPET CHRFCKWLIL 360 SRSKQKLAHV YSAHPTLKAE LEKCVNESES IRSFETNWAS MIDKFDLMKN TWLQGLFNIR 420 QKWVPVYLKD NFFAEMSPTQ KLETMNDFYK KHFNTKTSLK VLLTQFELAM ASRYEDEVEA 480 ELDTICTSPI LKTASPIEKQ AALIYTRTVF EKFQEEFVES FGCHVYKVKD GAVSKFNVTR 540 DDDALETFTI TYNAAKSMAT CSCKHFEFSG ILCRHIIAVF LMVDVRILPE EYFLRRWTRS 600 AMRGSLLDED FDNNQVACQA SVSSRFNDLC RDAIKFAEKG AKSTEMYRVV KAALQKVFTE 660 IIASDKTVST GAHRDAININ EEIPIDDAMN DQSLQDPERK VTNFLGQLLG SSWSPM

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MEVARTEGDE LIADYVNCLM SLDANSRPVE NINPSSLSVS AAAQIQTNIP SVLHEQSVPK  60
VFVQAGVEET DLEPVLGMEF ESDEAAKTFY NEYARRLGFP FRVGRSRRSK GTEEVLIMKR  120
FVCSKEGIYQ KKPSSEGTRK RERMSMREGC KAMMEVIRDN ERWVVSKLEK AHNHHLGTCT  180
RVGYLRSRGF INASDKANFI ASDTMMLLRQ NAFGQGGDAQ GLLDYFKRMQ AENPAFFYAI  240
QVDNNSCVSN AFWADAKART SYNYFGDTVT FDTTYKKNKY MMPFITFSGV NHHLQPVIFG  300
YALLIDENEY SFIWLFETWL EAMGGRRPVS FVTDQNRAMA AATAKVFPET CHRFCKWLIL  360
SRSKQKLAHV YSAHPTLKAE LEKCVNESES IRSFETNWAS MIDKFDLMKN TWLQGLFNIR  420
QKWVPVYLKD NFFAEMSPTQ KLETMNDFYK KHFNTKTSLK VLLTQFELAM ASRYEDEVEA  480
ELDTICTSPI LKTASPIEKQ AALIYTRTVF EKFQEEFVES FGCHVYKVKD GAVSKFNVTR  540
DDDALETFTI TYNAAKSMAT CSCKHFEFSG ILCRHIIAVF LMVDVRILPE EYFLRRWTRS  600
AMRGSLLDED FDNNQVACQA SVSSRFNDLC RDAIKFAEKG AKSTEMYRVV KAALQKVFTE  660
IIASDKTVST GAHRDAININ EEIPIDDAMN DQSLQDPERK VTNFLGQLLG SSWSPM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	1e-164	FAR1 family protein