PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020692117.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HSF

Protein Properties

Length: 356aa MW: 40336.2 Da PI: 4.6425

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020692117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.9	7.6e-34	24	115	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k y++++d+++++++ w +++n+f+++d+++f++++LpkyFkhsn++SF+RQLn+YgF+kv++++ w Fk++ F kg+k ll++ XP_020692117.1 24 FLTKCYDMVNDPATDDTVCWGDSENTFIIKDQHTFSRDLLPKYFKHSNISSFIRQLNTYGFRKVDHDK---------WVFKNDGFVKGQKVLLKT 109 9***************************************************************99.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 i rkks XP_020692117.1 110 ITRKKS 115 **97 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MEPEKPNGST GGGGVPHPST FPPFLTKCYD MVNDPATDDT VCWGDSENTF IIKDQHTFSR 60 DLLPKYFKHS NISSFIRQLN TYGFRKVDHD KWVFKNDGFV KGQKVLLKTI TRKKSPYNNI 120 NPQQQIQGKP SSVKAVEVGQ FGIEEEIERL KRDKNLLMQE LVTVRQHQQN TDAELNDLRQ 180 RLQVMELNQQ QMLSFLAMAV QSPTFLSQLV QQNINGRWRS EMNKKRRLPA LEDGLGSSDK 240 QIIKYEPSLM EAIELSSDPS KSSQSVCNGI NDLCANVDHI SIGEEDSCKS AEGENSIDFS 300 EYLEKLLIDS PILENNGQTE PLYFDIPDFN FDFDFPVQDV EMEASPNTAS SGEVLL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MEPEKPNGST GGGGVPHPST FPPFLTKCYD MVNDPATDDT VCWGDSENTF IIKDQHTFSR  60
DLLPKYFKHS NISSFIRQLN TYGFRKVDHD KWVFKNDGFV KGQKVLLKTI TRKKSPYNNI  120
NPQQQIQGKP SSVKAVEVGQ FGIEEEIERL KRDKNLLMQE LVTVRQHQQN TDAELNDLRQ  180
RLQVMELNQQ QMLSFLAMAV QSPTFLSQLV QQNINGRWRS EMNKKRRLPA LEDGLGSSDK  240
QIIKYEPSLM EAIELSSDPS KSSQSVCNGI NDLCANVDHI SIGEEDSCKS AEGENSIDFS  300
EYLEKLLIDS PILENNGQTE PLYFDIPDFN FDFDFPVQDV EMEASPNTAS SGEVLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	8e-85	HSF family protein