PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020691877.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 694aa MW: 74807.1 Da PI: 9.3991

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020691877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.1	3.2e-30	102	186	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ +r++ lk+plWe+vs+k++e g+ rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea XP_020691877.1 102 RWPRQETLALLKIRSDMDAVFRDATLKGPLWEDVSRKLAELGYARSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFTQLEA 186 8*******************************************************************866665..*****85 PP
2	trihelix	100.9	1e-31	500	585	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r+ ++ k+plWee+s m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a XP_020691877.1 500 RWPKPEVLALIRLRSGLESRYLETGPKGPLWEEISLGMKRLGYSRNAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 585 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MQQQGGSQYG VPPPEMAPPF SSAAMIGIPT GVEYIQQPQQ VAEAASPISS RPAPPQPAPP 60 RQQVSIFEDF GSGGGAMVRS FPDEEALGAG EDTERGGGGG NRWPRQETLA LLKIRSDMDA 120 VFRDATLKGP LWEDVSRKLA ELGYARSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF 180 FTQLEALHSS SGGAAGITSL PSPPSTAIIP SVVTSATGSA APPHKNSSSS LPALHDSTMT 240 PAPPVTRIQP AAAATPPVAA PAPPSRSILE LSTPAAVFGI SFSSNTSSSS ASESDGEETE 300 EGGVGALHDG GRKRKREAWP GGTRKMMAFF DGLMKQVMER TEAMQQRFLE TIEKREQDRM 360 IREEAWKRQE MARLNREYEL MAQERTMSAN RDAAVISFLQ KFTGIQASHP LAPPISAATP 420 PEEATAPPPT SPQENLKPPA PVVEVPAMQI ETNNNQLVRN DIVINQPTSS SEPAAALSEL 480 ADGMCLGGFD TISPSSSSSR WPKPEVLALI RLRSGLESRY LETGPKGPLW EEISLGMKRL 540 GYSRNAKRCK EKWENINKYF KKVKESNKKR PEDAKTCPYF HELDALYRKK QLFGGGGAAA 600 NPGTAAQQTQ EVAITPKVGE SLQNPAPITG LTEQENNKGQ KNPTSLRSSD GGNQEISGVQ 660 IPRSNGTGLS QLFFGGTPNR GSSTTLKKKT SLEN

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MQQQGGSQYG VPPPEMAPPF SSAAMIGIPT GVEYIQQPQQ VAEAASPISS RPAPPQPAPP  60
RQQVSIFEDF GSGGGAMVRS FPDEEALGAG EDTERGGGGG NRWPRQETLA LLKIRSDMDA  120
VFRDATLKGP LWEDVSRKLA ELGYARSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF  180
FTQLEALHSS SGGAAGITSL PSPPSTAIIP SVVTSATGSA APPHKNSSSS LPALHDSTMT  240
PAPPVTRIQP AAAATPPVAA PAPPSRSILE LSTPAAVFGI SFSSNTSSSS ASESDGEETE  300
EGGVGALHDG GRKRKREAWP GGTRKMMAFF DGLMKQVMER TEAMQQRFLE TIEKREQDRM  360
IREEAWKRQE MARLNREYEL MAQERTMSAN RDAAVISFLQ KFTGIQASHP LAPPISAATP  420
PEEATAPPPT SPQENLKPPA PVVEVPAMQI ETNNNQLVRN DIVINQPTSS SEPAAALSEL  480
ADGMCLGGFD TISPSSSSSR WPKPEVLALI RLRSGLESRY LETGPKGPLW EEISLGMKRL  540
GYSRNAKRCK EKWENINKYF KKVKESNKKR PEDAKTCPYF HELDALYRKK QLFGGGGAAA  600
NPGTAAQQTQ EVAITPKVGE SLQNPAPITG LTEQENNKGQ KNPTSLRSSD GGNQEISGVQ  660
IPRSNGTGLS QLFFGGTPNR GSSTTLKKKT SLEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	9e-65	Trihelix family protein