PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020689612.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

bHLH

Protein Properties

Length: 412aa MW: 45033.6 Da PI: 5.8723

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020689612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	218	265	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++ Lq XP_020689612.1 218 SHSLAERVRREKISQRMKLLQDLVPGC----NKITGKALMLDEIINYVQALQ 265 8************************....999**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MNCGTPSPDQ LRPALGLSSF NWNQSMDSLS PIFPLPASGE ISSFMGNPLN SMHVNRLMQF 60 PADPGFAERA ARYSCFSSAN YGAFSGVSEA AGKPSRVSSG HCLKAKESRM QLEMGDGEFG 120 SGKEDSSVTD PASVLGESSA KKRKAAAKRK LKVTVENDLI AKKSRSAEST EIEKDSGMPK 180 EEQNVDEKKQ GKDDGTKASE PFKDYIHVRA RRGQATDSHS LAERVRREKI SQRMKLLQDL 240 VPGCNKITGK ALMLDEIINY VQALQRQVEF LSMKLATVNP GLEFNLENLF AKESLLNQEN 300 ASFSSSLYPM ENLSASINFG HQSNEESPIP FTLANGIDTH CSIGQLDSIL HQAALMQSSL 360 DMFGSSASQV ENLWDDELNT VLQSSFGQNQ EIGAPSQSFH GQLSIPHMKI EL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MNCGTPSPDQ LRPALGLSSF NWNQSMDSLS PIFPLPASGE ISSFMGNPLN SMHVNRLMQF  60
PADPGFAERA ARYSCFSSAN YGAFSGVSEA AGKPSRVSSG HCLKAKESRM QLEMGDGEFG  120
SGKEDSSVTD PASVLGESSA KKRKAAAKRK LKVTVENDLI AKKSRSAEST EIEKDSGMPK  180
EEQNVDEKKQ GKDDGTKASE PFKDYIHVRA RRGQATDSHS LAERVRREKI SQRMKLLQDL  240
VPGCNKITGK ALMLDEIINY VQALQRQVEF LSMKLATVNP GLEFNLENLF AKESLLNQEN  300
ASFSSSLYPM ENLSASINFG HQSNEESPIP FTLANGIDTH CSIGQLDSIL HQAALMQSSL  360
DMFGSSASQV ENLWDDELNT VLQSSFGQNQ EIGAPSQSFH GQLSIPHMKI EL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	8e-63	bHLH family protein